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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACAATCCCACCTCCGGGGAGCACCGGATGGGGACCACCATCGTCGGCGTCTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCGgtatgcctcgacacctcccgatgcgggagatctcttccattgatgtggttggggtttaacgtggagccggtggcgtcgcgggcccaattttgatgcaaaa...

Basic information

species Oryza sativa
transcript LOC_Os02g53060.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g53060.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G152775_T04 (Zea mays), 5'ss of exon 1
GACAATCCCACCTCCGGGGAGCACCGGATGGGGACCACCATCGTCGGCGTCTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCGgtatgcctcgacacc--tcccgatgcgggagatctcttcca----ttgatgtggttggggtttaacgtggagccgg-tggcgtcgcgggcccaattttgatgcaaaa
||   ||| ||| |||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| | |||||||||||| |||||||| |||| |||    | |   |  ||||    |    |      |     |   | || | ||| |  |  ||| |  || ||||||  |||||| |  |||         
GAGGCTCCGACCACCGGGGAGCACCGGATGGGGACTACCATCGTCGGGGTCTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctttcgctcgtatcgatctatgtatgccgcaggagatcctatcgcgggtaggggtagatttggcgaaggatggcgttccgggcctaggttttc-------

upper sequence: LOC_Os02g53060.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G374881_T02 (Zea mays), 5'ss of exon 1
GACAATCCCACCTCCGGGGAGCACCGGATGGGGACCACCATCGTCGGCGTCTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCGgtatgcc--tcgacacctcccgatgcgggagatctcttccattgatgtggttg-gggtttaacgtggagccggtggcgtcgcgggcccaa-ttttgatgcaaaa-
|||   || ||| |||||||||||||||||||||||||||| ||||| ||||||||||| || ||||||||||||| ||| ||||||||||||||||| |||| |||  |||   | |  ||||  | |      |  |    |||   |  |  | |||  || ||    | |||||| ||||||| |  ||||       |  
GACGCCCCGACCACCGGGGAGCACCGGATGGGGACCACCATTGTCGGGGTCTGCTACGAGGGTGGCGTCGTCCTCGGCGCTGATTCCAGAACCAGCACTGgtacgcccttcgcttcatatcgatctgtgta--tgccgcaggggatcctgccgtagatttggcgcggg---gatggcgttgcgggcctaggttttcgcttggatc

upper sequence: LOC_Os02g53060.2 (Oryza sativa), 5'ss of exon 1
lower sequence: Vv04s0008g02850.t01 (Vitis vinifera), 5'ss of exon 1
--GACAATCCCACCTCCGGGGAGCACCGGATGGGGACCACCATCGTCGGCGTCTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCGgtatgcctcgacacctcccgatgcgggagatctcttccattgatgtggttggggtttaacgtggagccggtggcgtcgcgggcccaattttgatgcaaaa------
   |    ||    | |   |  ||||  ||||| || || ||| | || |||  |||| | || || |||||||||| |||||| |||||||||||||| ||||  ||||  |   |    ||       |  |||    |||  || | || |     |    ||     |          |      ||   |   |||      
GTAATGGACCTGAATGCACCGCACACC--ATGGGAACGACTATCATTGGAGTCACCTACAATGGTGGTGTCGTCCTCGGCGCCGACTCCAGAACCAGCACTGgtac-cctcctcgtttt---attttcttaaattctctgtttg--gttgctgagaaaagaaagagaatatataaaacaaaaagtttggattcttttttaaatttctt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88692730|gb|CI736305.1|CI736305
EST:     CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCG                         GAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACA
genomic: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCGgtatgcctcg ... taattcttagGAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACA
EST: gi|58685118|gb|CK073805.1|CK073805
EST:     CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCG                         GAATGTCTGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACA
genomic: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCGgtatgcctcg ... taattcttagGAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACA
EST: gi|88584075|gb|CI701601.1|CI701601
EST:     CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCG                         GAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACA
genomic: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCGgtatgcctcg ... taattcttagGAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACA
EST: gi|66924564|gb|CX111412.1|CX111412
EST:     CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCG                         GAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACA
genomic: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCGgtatgcctcg ... taattcttagGAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACA
EST: gi|88325048|gb|CI646464.1|CI646464
EST:     GCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCANNGCACCG                         GAATGTATGTGGCAAACCGCGCGTCGGACAAGAT-ACTCAGCTA-CTGAC
genomic: GCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCA--GCACCGgtatgcctcg ... taattcttagGAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGAC
EST: gi|163920296|gb|EG710592.1|EG710592
EST:     CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCG                         GAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACCGACA
genomic: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCGgtatgcctcg ... taattcttagGAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACA
EST: gi|88338208|gb|CI633327.1|CI633327
EST:     CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCG                         GAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACA
genomic: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCGgtatgcctcg ... taattcttagGAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACA