1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GACAATCCCACCTCCGGGGAGCACCGGATGGGGACCACCATCGTCGGCGTCTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCGgtatgcctcgacacctcccgatgcgggagatctcttccattgatgtggttggggtttaacgtggagccggtggcgtcgcgggcccaattttgatgcaaaa...
species | Oryza sativa |
transcript | LOC_Os02g53060.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCG GAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACAEST: gi|88421759|gb|CI621403.1|CI621403
genomic: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCGgtatgcctcg ... taattcttagGAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACA
EST: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCG GAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACAEST: gi|218499779|gb|FG945547.1|FG945547
genomic: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCGgtatgcctcg ... taattcttagGAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACA
EST: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCG GAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACAEST: gi|66924564|gb|CX111412.1|CX111412
genomic: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCGgtatgcctcg ... taattcttagGAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACA
EST: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCG GAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACAEST: gi|58685118|gb|CK073805.1|CK073805
genomic: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCGgtatgcctcg ... taattcttagGAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACA
EST: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCG GAATGTCTGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACAEST: gi|88721882|gb|CI743394.1|CI743394
genomic: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCGgtatgcctcg ... taattcttagGAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACA
EST: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCG GAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACAEST: gi|88573296|gb|CI664867.1|CI664867
genomic: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCGgtatgcctcg ... taattcttagGAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACA
EST: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCG GAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACAEST: gi|58588610|gb|CF986918.1|CF986918
genomic: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCGgtatgcctcg ... taattcttagGAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACA
EST: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCG GAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACAEST: gi|88358083|gb|CI605008.1|CI605008
genomic: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCGgtatgcctcg ... taattcttagGAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACA
EST: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCG GAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACAEST: gi|58692319|gb|CK081006.1|CK081006
genomic: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCGgtatgcctcg ... taattcttagGAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACA
EST: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCG GAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACAEST: gi|88325048|gb|CI646464.1|CI646464
genomic: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCGgtatgcctcg ... taattcttagGAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACA
EST: GCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCANNGCACCG GAATGTATGTGGCAAACCGCGCGTCGGACAAGAT-ACTCAGCTA-CTGACEST: gi|25799545|gb|CA755506.1|CA755506
genomic: GCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCA--GCACCGgtatgcctcg ... taattcttagGAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGAC
EST: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCG GAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACAEST: gi|88309396|gb|CI655764.1|CI655764
genomic: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCGgtatgcctcg ... taattcttagGAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACA
EST: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCG GAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACAEST: gi|38477245|gb|CF961378.1|CF961378
genomic: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCGgtatgcctcg ... taattcttagGAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACA
EST: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCG GAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACAEST: gi|218498714|gb|FG963991.1|FG963991
genomic: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCGgtatgcctcg ... taattcttagGAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACA
EST: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCA-CACCG GAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACAEST: gi|88390264|gb|CI605717.1|CI605717
genomic: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCGgtatgcctcg ... taattcttagGAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACA
EST: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCG GAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACAEST: gi|218498950|gb|FG948071.1|FG948071
genomic: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCGgtatgcctcg ... taattcttagGAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACA
EST: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCG GAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACAEST: gi|38472737|gb|CF956869.1|CF956869
genomic: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCGgtatgcctcg ... taattcttagGAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACA
EST: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCG GAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACAEST: gi|88720636|gb|CI743935.1|CI743935
genomic: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCGgtatgcctcg ... taattcttagGAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACA
EST: TGCTACGACGGCGGCGTCGTCCTCGCCGCCGATNTC-AGAACCAGCACCG GAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCACCTAACTGACAEST: gi|88584075|gb|CI701601.1|CI701601
genomic: TGCTACGACGGCGGCGTCGTCCTCGCCGCCGAT-TCCAGAACCAGCACCGgtatgcctcg ... taattcttagGAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACA
EST: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCG GAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACAEST: gi|33803228|gb|CF327486.1|CF327486
genomic: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCGgtatgcctcg ... taattcttagGAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACA
EST: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCG GAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACAEST: gi|88302060|gb|CI667906.1|CI667906
genomic: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCGgtatgcctcg ... taattcttagGAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACA
EST: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCG GAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACAEST: gi|218504275|gb|FG947024.1|FG947024
genomic: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCGgtatgcctcg ... taattcttagGAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACA
EST: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCG GAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACAEST: gi|88338208|gb|CI633327.1|CI633327
genomic: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCGgtatgcctcg ... taattcttagGAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACA
EST: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCG GAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACAEST: gi|13165514|gb|AU174311.1|AU174311
genomic: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCGgtatgcctcg ... taattcttagGAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACA
EST: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCG GAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACAEST: gi|88342591|gb|CI655593.1|CI655593
genomic: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCGgtatgcctcg ... taattcttagGAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACA
EST: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCG GAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACAEST: gi|88692730|gb|CI736305.1|CI736305
genomic: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCGgtatgcctcg ... taattcttagGAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACA
EST: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCG GAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACAEST: gi|218486985|gb|FG965418.1|FG965418
genomic: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCGgtatgcctcg ... taattcttagGAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACA
EST: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCG GGATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACAEST: gi|14191702|gb|AU183913.1|AU183913
genomic: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCGgtatgcctcg ... taattcttagGAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACA
EST: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCG GAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACA
genomic: CTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCGgtatgcctcg ... taattcttagGAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACAATCCCACCTCCGGGGAGCACCGGATGGGGACCACCATCGTCGGCGTCTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCGgtatgcctcgacacctcccgatgcgggagatctcttccattgatgtggttggggtttaacgtggagccggtggcgtcgcgggcccaattttgatgcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcccg
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtggcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgcgggc