Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGAACACCATGGTGAACAAACACTTCTTGTCCCTTTCGGTCCTCATCGTCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatcgccatgagttgggtttcaggcttcagtgaactgatcgggttttgtactgagcctaagagaatgatgcagtgatgctcttgtgtttgatgatgatgcag

Basic information

species Oryza sativa
transcript LOC_Os02g52710.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88354439|gb|CI624829.1|CI624829
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|86888494|gb|CI303776.1|CI303776
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|88348911|gb|CI653955.1|CI653955
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|33795763|gb|CF323751.1|CF323751
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|88399541|gb|CI606162.1|CI606162
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|88344976|gb|CI625822.1|CI625822
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGAAAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAAATTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|86850713|gb|CI309525.1|CI309525
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|86850267|gb|CI305506.1|CI305506
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|88825524|gb|CI776089.1|CI776089
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|88288516|gb|CI661721.1|CI661721
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|88576316|gb|CI670461.1|CI670461
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|88354042|gb|CI636240.1|CI636240
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|88344978|gb|CI625824.1|CI625824
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|88310938|gb|CI659541.1|CI659541
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|88737277|gb|CI760785.1|CI760785
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|66913107|gb|CX099955.1|CX099955
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|88346913|gb|CI628583.1|CI628583
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTNTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTANAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|88354448|gb|CI624838.1|CI624838
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|88290571|gb|CI666944.1|CI666944
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|86850993|gb|CI311211.1|CI311211
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTTCTGTTTCAG                         GGATTCAACTGGGAGTCGTGCAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|88825879|gb|CI776444.1|CI776444
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|88360254|gb|CI611973.1|CI611973
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|86903847|gb|CI302493.1|CI302493
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|88572888|gb|CI664459.1|CI664459
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|88574544|gb|CI666313.1|CI666313
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTTCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|88392507|gb|CI625329.1|CI625329
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|86894558|gb|CI308279.1|CI308279
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|88351892|gb|CI624697.1|CI624697
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|88340759|gb|CI636919.1|CI636919
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|88761316|gb|CI770872.1|CI770872
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|86900826|gb|CI304031.1|CI304031
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|88302791|gb|CI668637.1|CI668637
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|88392660|gb|CI625482.1|CI625482
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|88317022|gb|CI625659.1|CI625659
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|88392512|gb|CI625334.1|CI625334
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGGGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|58608783|gb|CK036816.1|CK036816
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|88306480|gb|CI638270.1|CI638270
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|88360656|gb|CI647666.1|CI647666
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|88296331|gb|CI669107.1|CI669107
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|88575858|gb|CI670003.1|CI670003
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|87008878|gb|CI304821.1|CI304821
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|88352053|gb|CI626053.1|CI626053
EST:     CCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGCTCCTGTTTCAG                         GGATTCAAGTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: CCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAG-TCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|33795432|gb|CF323586.1|CF323586
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|88360799|gb|CI647809.1|CI647809
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|88345034|gb|CI625880.1|CI625880
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|88337748|gb|CI632250.1|CI632250
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GCATTCAANTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|88331107|gb|CI639518.1|CI639518
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|88573078|gb|CI664649.1|CI664649
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGNGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|88309669|gb|CI656410.1|CI656410
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|33795738|gb|CF323738.1|CF323738
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|33692900|gb|CF321139.1|CF321139
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|86909396|gb|CI304651.1|CI304651
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|88363477|gb|CI618038.1|CI618038
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACGACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|86902519|gb|CI304338.1|CI304338
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
EST: gi|86904074|gb|CI304508.1|CI304508
EST:     TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAG                         GGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG
genomic: TCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 71 (upstream exon), 73 (downstream exon)
Score: 26

GCTGAACACCATGGTGAACAAACACTTCTTGTCCCTTTCGGTCCTCATCGTCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatc ... gatgatgcagGGATTCAACTGGGAGTCGTGGAAGGAGAATGGCGGGTGGTACAACTTCCTGATGGGCAAGGTGGACGACATCGCCGCAGCCGGCATCACCCACGTCTGGC




<











<


<









Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTGAACACCATGGTGAACAAACACTTCTTGTCCCTTTCGGTCCTCATCGTCCTCCTTGGCCTCTCCTCCAACTTGACAGCCGGGCAAGTCCTGTTTCAGgtaagagatcgccatgagttgggtttcaggcttcagtgaactgatcgggttttgtactgagcctaagagaatgatgcagtgatgctcttgtgtttgatgatgatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC