1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATGTTTTTCAGTCTCCACGAGCTCGGATTGCAGTGCGAGCTAGCACCGAGCGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCACgtcagttacctgaaaatctgtaatagtgtttttctgttctgtgtctgatgatggcagtaggctgatcagtaagtcggcatttctgtaattttggttgtag
species | Oryza sativa |
transcript | LOC_Os02g52650.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCAC ATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCEST: gi|88311190|gb|CI570264.1|CI570264
genomic: CGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCACgtcagttacc ... ttggttgtagATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACC
EST: CGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCAC ATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGCEST: gi|88302173|gb|CI668019.1|CI668019
genomic: CGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCACgtcagttacc ... ttggttgtagATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGC
EST: CGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCAC ATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGCEST: gi|88383946|gb|CI631836.1|CI631836
genomic: CGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCACgtcagttacc ... ttggttgtagATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGC
EST: CGTGCGAACTGGCTGGCTGGGCTCGATCCACCTCCTCACCTCGACGGCAC ATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGCEST: gi|33673864|gb|CF302103.1|CF302103
genomic: CGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCACgtcagttacc ... ttggttgtagATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGC
EST: CGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCAC ATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGCEST: gi|88347524|gb|CI637464.1|CI637464
genomic: CGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCACgtcagttacc ... ttggttgtagATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGC
EST: CGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCAC ATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGCEST: gi|33683439|gb|CF311678.1|CF311678
genomic: CGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCACgtcagttacc ... ttggttgtagATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGC
EST: CGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCAC ATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGCEST: gi|88341656|gb|CI641408.1|CI641408
genomic: CGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCACgtcagttacc ... ttggttgtagATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGC
EST: CGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCAC ATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGCEST: gi|88336163|gb|CI647357.1|CI647357
genomic: CGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCACgtcagttacc ... ttggttgtagATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGC
EST: CGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCAC ATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGCEST: gi|58590186|gb|CF988494.1|CF988494
genomic: CGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCACgtcagttacc ... ttggttgtagATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGC
EST: CGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCAC ATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGCEST: gi|33672022|gb|CF300261.1|CF300261
genomic: CGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCACgtcagttacc ... ttggttgtagATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGC
EST: CGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCAC ATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGCEST: gi|88288599|gb|CI663388.1|CI663388
genomic: CGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCACgtcagttacc ... ttggttgtagATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGC
EST: CGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCAC ATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGCEST: gi|88339332|gb|CI633903.1|CI633903
genomic: CGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCACgtcagttacc ... ttggttgtagATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGC
EST: CGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCAC ATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGCEST: gi|88571596|gb|CI662969.1|CI662969
genomic: CGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCACgtcagttacc ... ttggttgtagATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGC
EST: CGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCAC ATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGCEST: gi|88332746|gb|CI660264.1|CI660264
genomic: CGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCACgtcagttacc ... ttggttgtagATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGC
EST: CGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCAC ATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGCEST: gi|33799384|gb|CF325551.1|CF325551
genomic: CGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCACgtcagttacc ... ttggttgtagATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGC
EST: CGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCAC ATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGCEST: gi|88335275|gb|CI650240.1|CI650240
genomic: CGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCACgtcagttacc ... ttggttgtagATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGC
EST: CGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCAC ATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGC
genomic: CGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCACgtcagttacc ... ttggttgtagATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTTTTTCAGTCTCCACGAGCTCGGATTGCAGTGCGAGCTAGCACCGAGCGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCACgtcagttacctgaaaatctgtaatagtgtttttctgttctgtgtctgatgatggcagtaggctgatcagtaagtcggcatttctgtaattttggttgtag
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