Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACGTCGTGCTCGCCGCCTTTGTCATGGCGACGGTCTTCGCCGTTCTTGGCGGGCGGCGCCCCGCCGTCTGGATCGCCGCCACCAAGGCCCTGCGTCGAGgtgagtgtttcgtccttcttcccacgagcagccatgtatttcttgtttcacgagtcgcgctgacttcagctactactacagcatcgtgctcgtgcagttt...

Basic information

species Oryza sativa
transcript LOC_Os02g52630.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88364936|gb|CI616355.1|CI616355
EST:     CGGGCGGCGCCCCGCCGTCTGGATCGCCGCCACCAAGGCCCTGTGTCGAG                         GTTCCGACGATAAATCGATTCCATTGGCACGAAGCGCCGCTGACAAACTCC
genomic: CGGGCGGCGCCCCGCCGTCTGGATCGCCGCCACCAAGGCCCTGCGTCGAGgtgagtgttt ... ttctgtgcagGTTCCGACGATAAATCGATTCCATTGGCACGAAGCGCCGCTGACAAACTCC
EST: gi|88423903|gb|CI609934.1|CI609934
EST:     CGGGCGACGCCCCGCCGTCTGGATCGCCGCCACCAAGGCCCTGCGTCGAG                         GTTCCGACGATAAATCGATTCCATTGGCACGAAGCGCCGCTGACAAACTCC
genomic: CGGGCGGCGCCCCGCCGTCTGGATCGCCGCCACCAAGGCCCTGCGTCGAGgtgagtgttt ... ttctgtgcagGTTCCGACGATAAATCGATTCCATTGGCACGAAGCGCCGCTGACAAACTCC