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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGGAGGAGCACGAGGTGTACGGGCAAGAGATCCCGGAGGACGGGGACATGGACGGCGCGGACGTCGACATGGCCTCCGGCGGGGACGACGCCGCGAAGgtctccctacctccatgatccgcgcatctatggtctatgaacctaaccctacttcgagtagctgactactaccccatttggcttgttgcag

Basic information

species Oryza sativa
transcript LOC_Os02g52140.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g52140.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G108919_T01 (Zea mays), 5'ss of exon 1
CGAGGAGGAGCACGAGGTGTACGGGCAAGAGATCCCGGAGGACGGGGACATGGACGGCGCGGACGTCGACATGGCCTCCGGCGGGGACGACGCCGCGAAGgtctccctacctccatgatccgcgcatctatggtctatgaacctaaccctacttcgagtagctgactact-accccatttggcttgt-tgcag
||| |||||||||||||| ||||| || |||||||| |||||||| || ||||||||||| ||||| || |||||| ||| |||||||||||| ||||||||    | |||||  | || || |  | |     |||| | |||| |  |   ||   | || || |  | |||||  | ||  ||  | |||
CGACGAGGAGCACGAGGTTTACGGCCAGGAGATCCCTGAGGACGGCGATATGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgta---ccacctctgt-attcgtgtgttt-cacgctat-accctagcaatgggtcc--ttgcggattgttgacccccctcggggtgcgtacag

upper sequence: LOC_Os02g52140.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM5G862331_T01 (Zea mays), 5'ss of exon 1
CGAGGAGGAGCACGAGGTGTACGGGCAAGAGATCCCGGAGGACGGGGACATGGACGGCGCGGACGTCGACATGGCCTCCGGCGGGGACGACGCCGCGAAGgtctccctacctccatgatccgcgcatctatggtctatgaacctaaccctacttcgagtagctgactact-accccatttggcttgttgcag
|||||||||||||||||| ||||| || || |||||||||||||| |||||||||||||| ||||| || |||||  ||  |||||| ||||| ||||||||  | | ||      |||||  |  |||     |||| | |||  |||||  ||   | || |  | || ||||| ||  | |   |||||
CGAGGAGGAGCACGAGGTTTACGGCCAGGAAATCCCGGAGGACGGCGACATGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccactg----gatccatgtgtct-cacgctat-accctcgccctagatcc--ttgcgggttgctgacccccttcagttgcgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32948090|gb|BP184662.1|BP184662
EST:     TGGACGGCGCGGACGTCGACATGGCCTCCGGCGGGGACGACGCCGCGAAG                         CTGCAGGAGCTCGACCAGATGAAGCGAAGGCTGAAGGAGATGGAGGAAGAG
genomic: TGGACGGCGCGGACGTCGACATGGCCTCCGGCGGGGACGACGCCGCGAAGgtctccctac ... cttgttgcagCTGCAGGAGCTCGACCAGATGAAGCGAAGGCTGAAGGAGATGGAGGAAGAG
EST: gi|86830660|gb|CI293677.1|CI293677
EST:     TGGACGGCGCGGACGTCGACATGGCCTCCGGCGGGGACGACGCCGCGAAG                         CTGCAGGAGCTCGACCAGATGAAGCGAAGGCTGAAGGAGATGGAGGAAGAG
genomic: TGGACGGCGCGGACGTCGACATGGCCTCCGGCGGGGACGACGCCGCGAAGgtctccctac ... cttgttgcagCTGCAGGAGCTCGACCAGATGAAGCGAAGGCTGAAGGAGATGGAGGAAGAG
EST: gi|88326696|gb|CI658422.1|CI658422
EST:     TGGACGGCGCGGACGTCGACATGGCCTCCGGCGGGGACGACGCCGCGAAG                         CTGCAGGAGCTCGACCAGATGAAGCGAAGGCTGAAGGAGATGGAGGAAGAG
genomic: TGGACGGCGCGGACGTCGACATGGCCTCCGGCGGGGACGACGCCGCGAAGgtctccctac ... cttgttgcagCTGCAGGAGCTCGACCAGATGAAGCGAAGGCTGAAGGAGATGGAGGAAGAG
EST: gi|88376927|gb|CI639252.1|CI639252
EST:     TGGACGGCGCGGACGTCGACATGGCCTCCGGCGGGGACGACGCCGCGAAG                         CTGCAGGAGCTCGACCAGATGAAGCGAAGGCTGAAGGAGATGGAGGAAGAG
genomic: TGGACGGCGCGGACGTCGACATGGCCTCCGGCGGGGACGACGCCGCGAAGgtctccctac ... cttgttgcagCTGCAGGAGCTCGACCAGATGAAGCGAAGGCTGAAGGAGATGGAGGAAGAG
EST: gi|88353264|gb|CI654530.1|CI654530
EST:     TGGACGGCGCGGACGTCGACATGGCCTCCGGCGGGGACGACGCCGCGAAG                         CTGCAGGAGCTCGACCAGATGAAGCGAAGGCTGAAGGAGATGGAGGAAGAG
genomic: TGGACGGCGCGGACGTCGACATGGCCTCCGGCGGGGACGACGCCGCGAAGgtctccctac ... cttgttgcagCTGCAGGAGCTCGACCAGATGAAGCGAAGGCTGAAGGAGATGGAGGAAGAG
EST: gi|88351377|gb|CI627393.1|CI627393
EST:     TGGACGGCGCGGACGTCGACATGGCCTCCGGCGGGGACGACGCCGCGAAG                         CCGCAGGAGCTCGACCAGATTAAGCGAAGGCTGAAGGAGATGGAGGAAGAG
genomic: TGGACGGCGCGGACGTCGACATGGCCTCCGGCGGGGACGACGCCGCGAAGgtctccctac ... cttgttgcagCTGCAGGAGCTCGACCAGATGAAGCGAAGGCTGAAGGAGATGGAGGAAGAG
EST: gi|33664619|gb|CF295586.1|CF295586
EST:     TGGACGGCGCGGACGTCGACATGGCCTCCGGCGGGGACGACGCCGCGAAG                         CTGCAGGAGCTCGACCAGATGAAGCGAAGGCTGAAGGAGATGGAGGAAGAG
genomic: TGGACGGCGCGGACGTCGACATGGCCTCCGGCGGGGACGACGCCGCGAAGgtctccctac ... cttgttgcagCTGCAGGAGCTCGACCAGATGAAGCGAAGGCTGAAGGAGATGGAGGAAGAG
EST: gi|218499461|gb|FG958244.1|FG958244
EST:     TGGACGGCGCGGACGTCGACATGGCCTCCGGCGGGGACGACGCCGCGAAG                         CTGCAGGAGCTCGACCAGATGAAGCGAAGGCTGAAGGAGATGGAGGAAGAG
genomic: TGGACGGCGCGGACGTCGACATGGCCTCCGGCGGGGACGACGCCGCGAAGgtctccctac ... cttgttgcagCTGCAGGAGCTCGACCAGATGAAGCGAAGGCTGAAGGAGATGGAGGAAGAG
EST: gi|88587501|gb|CI705252.1|CI705252
EST:     TGGACGGCGCGGACGTCGACATGGCCTCCGGCGGGGACGACGCCGCGAAG                         CTGCAGGAGCTCGACCAGATGAAGCGAAGGCTGAAGGAGATGGAGGAAGAG
genomic: TGGACGGCGCGGACGTCGACATGGCCTCCGGCGGGGACGACGCCGCGAAGgtctccctac ... cttgttgcagCTGCAGGAGCTCGACCAGATGAAGCGAAGGCTGAAGGAGATGGAGGAAGAG
EST: gi|32948232|gb|BP184804.1|BP184804
EST:     TGGACGGCGCGGACGTCGACATGGCCTCCGGCGGGGACGACGCCGCGAAG                         CTGCAGGAGCTCGACCAGATGAAGCGAAGGCTGAAGGAGATGGAGGAAGAG
genomic: TGGACGGCGCGGACGTCGACATGGCCTCCGGCGGGGACGACGCCGCGAAGgtctccctac ... cttgttgcagCTGCAGGAGCTCGACCAGATGAAGCGAAGGCTGAAGGAGATGGAGGAAGAG
EST: gi|88327844|gb|CI648241.1|CI648241
EST:     TGGACGGCGCGGACGTCGACATGGCCTCCGGCGGGGACGACGCCGCGAAG                         CTGCAGGAGCTCGACCAGATGAAGCGAAGGCTGAAGGAGATGGAGGAAGAG
genomic: TGGACGGCGCGGACGTCGACATGGCCTCCGGCGGGGACGACGCCGCGAAGgtctccctac ... cttgttgcagCTGCAGGAGCTCGACCAGATGAAGCGAAGGCTGAAGGAGATGGAGGAAGAG