Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATACTGTTCTTTGAGGGACAGCGCTCCGGCAGGCTTCCTCCCGACCAGCGTCTCCGCTGGCGCCGCGACTCCGGCCTCCACGACGGCGCCGCCGCCAGCgtacgtattctcgtcctataacttggcgttaagaatgtactactggtgaagcagcattgtgatttgtgagtaacctgctgtggccgcgtgtag

Basic information

species Oryza sativa
transcript LOC_Os02g50040.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g50040.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G076049_T01 (Zea mays), 5'ss of exon 1
CATACTGTTCTTTGAGGGACAGCGCTCCGGCAGGCTTCCTCCCGACCAGCGTCTCCGCTGGCGCCGCGACTCCGGCCTCCACGACGGCGCCGCCGCCAGCgtacgtattct---------cgtcctataacttggcgttaagaatgtactactgg----tgaagcagcattgtg-------atttgtgag---taacctgctgt--ggccg-cgtgtag---
||| || ||||| ||||| |||||||| || ||||| || || |||||||| ||||||||||||||||||||||||||||||||||||||||| ||| | ||||||   |          || |  |||| |     |  | | |   ||  |||    |  || | | |||         || ||||||   || |  ||  |  || || || |||    
CATCCTCTTCTTCGAGGGGCAGCGCTCGGGGAGGCTCCCGCCGGACCAGCGCCTCCGCTGGCGCCGCGACTCCGGCCTCCACGACGGCGCCGCGGCCGGGgtacgtgcaccgacccagtccgactaataaatcactctctatagttgccttttggcctatagagtaccgttgaagcaagacatgtgtgagcattaccgcgccatttggtcgtcgcgtaacag

upper sequence: LOC_Os02g50040.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA08G04840.1 (Glycine max), 5'ss of exon 1
CATACTGTTCTTTGAGGGACAGCGCTCCGGCAGGCTTCCTCCCGACCAGCGTCTCCGCTGGCGCCGCGACTCCGGCCTCCACGACGGCGCCGCCGCCAGCgtacgtattctcgtcctataacttggcgttaagaatgtactactggtgaagcagcattgtgatttgtgagtaacctgctgtggccgcgtgtag
||| || ||||| || || |||||||||||||  || ||  |||||||||| ||||||||||||| |||||| |   | |||||||||||| ||||| | ||| || |||| || || | |        ||      ||       ||| |  |  |  |||  |  |   |   || |||   | |      
CATTCTCTTCTTCGAAGGCCAGCGCTCCGGCAAACTCCCCGCCGACCAGCGCCTCCGCTGGCGCCACGACTCTGCATTGCACGACGGCGCCACCGCCGGAgtaagt-ttcttgttctgttatgaaaatgtagattgatagagaatatgatgatgattaatgaggtaggcacattgtgttgtttactcag----

upper sequence: LOC_Os02g50040.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA05G34850.1 (Glycine max), 5'ss of exon 1
CATACTGTTCTTTGAGGGACAGCGCTCCGGCAGGCTTCCTCCCGACCAGCGTCTCCGCTGGCGCCGCGACTCCGGCCTCCACGACGGCGCCGCCGCCAGCgtacgtattctcgtcctataacttggcgttaagaatgtactactggtgaagcagcattgtgatttgtgag--taacctgctgtggccgcgtgtag-
||| || ||||| || || |||||||||||||  || ||  |||||||||| ||||||||||||| |||||| |   | |||||||||||| ||||| | ||| || ||   ||  | |          | | |  ||| ||  |||  || |  ||  |||||  ||||  |       ||||      | |   
CATTCTCTTCTTCGAAGGCCAGCGCTCCGGCAAACTCCCCGCCGACCAGCGCCTCCGCTGGCGCCACGACTCTGCATTGCACGACGGCGCCACCGCCGGAgtaagtttttctgttttgtt--------ctgaaagggtaata--ggtagag-aaaatgatgattaatgaggttggtacattgtgtttttttctcag