1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCCGTGGAAGATTCTCGATACCTGTCCCTCGTCGTCGTCCTCCTCCGCCGGCCGCCGCCGACGACCGCAGCAGGGGTGGATCCGGGGCGGCGCCGATTCGgtgagtccggtctcgcgagctcgagctgtttgtttgtttgtttgtttggtggggattggattgggttggatttgcgttgtgtaggctagccgcatcagcg...
species | Oryza sativa |
transcript | LOC_Os02g49230.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCCGCCGCCGACGACCGCAGCAGGGGTGGATCCGGGGCGGCGCCGATTCG AGCAATTCAAGTGGTTCATTTCATGGCCTGTATCAATATACTTATATATCTEST: gi|88342344|gb|CI645866.1|CI645866
genomic: GCCGCCGCCGACGACCGCAGCAGGGGTGGATCCGGGGCGGCGCCGATTCGgtgagtccgg ... ttggttgcagAGCAATTCAAGTGGTTCATTTCATGGCCTGTATCAATATACTTATATATCT
EST: GCCGCCGCCGACGACCGCAGCAGGGGTGGATCCGGGGCGGCGCCGATTCG AGCAATTCAAGTGGTTCATTTCATGGCCTGTATCAATATACTTATATATCTEST: gi|88349708|gb|CI632843.1|CI632843
genomic: GCCGCCGCCGACGACCGCAGCAGGGGTGGATCCGGGGCGGCGCCGATTCGgtgagtccgg ... ttggttgcagAGCAATTCAAGTGGTTCATTTCATGGCCTGTATCAATATACTTATATATCT
EST: GCCGCCGCCGACGACCGCAGCAGGGGTGGATCCGGGGCGGCGCCGATTCG AGCAATTCAAGTGGTTCATTTCATGGCCTGTATCAATATACTTATATATCTEST: gi|33815342|gb|CF333526.1|CF333526
genomic: GCCGCCGCCGACGACCGCAGCAGGGGTGGATCCGGGGCGGCGCCGATTCGgtgagtccgg ... ttggttgcagAGCAATTCAAGTGGTTCATTTCATGGCCTGTATCAATATACTTATATATCT
EST: GCCGCCGCCGACGACCGCAGCAGGGGTGGATCCGGGGCGGCGCCGATTCG AGCAATTCAAGTGGTTCATTTCATGGCCTGTATCAATATACTTATATATCT
genomic: GCCGCCGCCGACGACCGCAGCAGGGGTGGATCCGGGGCGGCGCCGATTCGgtgagtccgg ... ttggttgcagAGCAATTCAAGTGGTTCATTTCATGGCCTGTATCAATATACTTATATATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCGTGGAAGATTCTCGATACCTGTCCCTCGTCGTCGTCCTCCTCCGCCGGCCGCCGCCGACGACCGCAGCAGGGGTGGATCCGGGGCGGCGCCGATTCGgtgagtccggtctcgcgagctcgagctgtttgtttgtttgtttgtttggtggggattggattgggttggatttgcgttgtgtaggctagccgcatcagcg
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