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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCAAGCCAGGCTCCACGCACACCAGTGTGAAGGGGGTCTTTGCTGCTGGGGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaattgatgatttttcaggttacctgtgattaatttttttctgcactttcttagagatcagtcgcttcatgggttgctatttgctagtgcgaat...

Basic information

species Oryza sativa
transcript LOC_Os02g48290.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g48290.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA11G09350.1 (Glycine max), 5'ss of exon 1
ACCAAGCCAGGCTCCACGCACACCAGTGTGAAGGGGGTCTTTGCTGCTGGGGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaattgatgatttttcaggttacctgtgattaatttt-----tttctgcactttcttaga-gatcagtcgcttcatgg-gttgctatttgctagtgcgaat
|| ||||| ||  | ||| | ||||||||| |||| || ||||||||||||||||| ||||||||||||||| | || ||||||||||| |||||  | |||  ||   | |||  || |  | | | | |    ||  | ||     || ||| |  |   || | ||||  | | ||    | || | ||| |  | || |    
ACGAAGCCGGGGACGACGAAGACCAGTGTGGAGGGAGTGTTTGCTGCTGGGGATGTTCAGGACAAGAAGTATAGGCAAGCTATTACTGCTGCTGGCACTGgtacgttg-tagat--ttatctaagatgcgtagagtttttattggacattgctgtatgtgtgtatatgatccctggttttgaagcgtagttatgt-tttgtcca---

upper sequence: LOC_Os02g48290.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA01G36070.1 (Glycine max), 5'ss of exon 1
ACCAAGCCAGGCTCCACGCACACCAGTGTGAAGGGGGTCTTTGCTGCTGGGGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgt---ttgtgaattg----atgatttttcaggttacctgtgattaatttttttctgcactttcttagagatcagtcgcttcatgggttgctatttgctagtgcgaat
|| ||||| ||  | ||| | ||||||||  |||| || ||||||||||||||||| ||||||||||||||| | || ||||||||||| |||||  | |||   ||    |||     |||||   |   | | | | |     |||  | | || || |   |    || ||   | |  |   |||     |  |||||     
ACGAAGCCGGGGACGACGAAGACCAGTGTTGAGGGAGTGTTTGCTGCTGGGGATGTTCAGGACAAGAAGTATAGGCAAGCTATTACTGCTGCTGGCACTGgtaagttacagatttgtctatgatgcatagagctgcttattggacattggtgtatgtacatgtgtgtgtataagatccctggt--tttgaagcatagtagtg-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88411487|gb|CI519011.1|CI519011
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGGTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|86495418|gb|CI138051.1|CI138051
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|86435231|gb|CI106464.1|CI106464
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|86892169|gb|CI332224.1|CI332224
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|88512245|gb|CI439751.1|CI439751
EST:     TACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: TACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|88828855|gb|CI073725.1|CI073725
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCGGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|87018155|gb|CI275969.1|CI275969
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|86488663|gb|CI131296.1|CI131296
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|86502113|gb|CI144746.1|CI144746
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|88214253|gb|CI214102.1|CI214102
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|86497447|gb|CI140080.1|CI140080
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATG-CTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|89164793|gb|CI101881.1|CI101881
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|88319695|gb|CI520738.1|CI520738
EST:     TTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: TTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|58654383|gb|CK043063.1|CK043063
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|88271395|gb|CI387448.1|CI387448
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCA-                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|38473801|gb|CF957933.1|CF957933
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|88381389|gb|CI528369.1|CI528369
EST:     ATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: ATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|86502718|gb|CI145351.1|CI145351
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|86497727|gb|CI140360.1|CI140360
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACCCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|29638654|gb|CB643663.1|CB643663
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|86823748|gb|CI258788.1|CI258788
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|86832754|gb|CI345168.1|CI345168
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|86598428|gb|CI355045.1|CI355045
EST:     TATTACTGCCGCTGGATCA-                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCA-GAGGTCGGTGCAC
genomic: TATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|88251837|gb|CI349074.1|CI349074
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|88852509|gb|CI374277.1|CI374277
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGCCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|88214393|gb|CI214242.1|CI214242
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|89194717|gb|CI117154.1|CI117154
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|29660036|gb|CB656311.1|CB656311
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|88427607|gb|CI548860.1|CI548860
EST:     GTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|88983181|gb|CI020745.1|CI020745
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|33380616|gb|CF195959.1|CF195959
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|86522728|gb|CI162934.1|CI162934
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|86905356|gb|CI285319.1|CI285319
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|88259202|gb|CI363495.1|CI363495
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|87007019|gb|CI275327.1|CI275327
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGTCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|86604203|gb|CI114977.1|CI114977
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|38472394|gb|CF956525.1|CF956525
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|86825389|gb|CI360033.1|CI360033
EST:     GTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACCCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|86503320|gb|CI145953.1|CI145953
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|66923242|gb|CX110090.1|CX110090
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|163925995|gb|EG714999.1|EG714999
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGG
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGG
EST: gi|86506358|gb|CI148991.1|CI148991
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|86436700|gb|CI118422.1|CI118422
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|86880855|gb|CI339172.1|CI339172
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|86435880|gb|CI107113.1|CI107113
EST:     GGATGTGCAGGACCAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|88200270|gb|CI200120.1|CI200120
EST:     GGATGTGCAGGATAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|89182450|gb|CI113819.1|CI113819
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|87015800|gb|CI279552.1|CI279552
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|88382164|gb|CI533368.1|CI533368
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|88991265|gb|CI108652.1|CI108652
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|88220986|gb|CI220942.1|CI220942
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|287050|gb|D15855.1|D15855
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAN-ACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|86854181|gb|CI254126.1|CI254126
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|86420224|gb|CI055025.1|CI055025
EST:     GAATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|88224202|gb|CI224051.1|CI224051
EST:     GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|88264515|gb|CI368289.1|CI368289
EST:     GGATTTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
genomic: GGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC
EST: gi|88473140|gb|CI410411.1|CI410411
EST:     ATCGCCAGGCTATTACTGCCGCTGGATCAG                         GGTGCATGGCTGCTTTGGACNCGGAGCACTATCTNCAGGAGGTCGGTGCAC
genomic: ATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 73 (downstream exon)
Score: 26

ACCAAGCCAGGCTCCACGCACACCAGTGTGAAGGGGGTCTTTGCTGCTGGGGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaat ... ttgtatccagGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCACAGGAGGGCAAGGCCGATTGACTATCTCAGGAGGAAGCGACCACCAGCGT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACCAAGCCAGGCTCCACGCACACCAGTGTGAAGGGGGTCTTTGCTGCTGGGGATGTGCAGGACAAGAAGTATCGCCAGGCTATTACTGCCGCTGGATCAGgtttgtgaattgatgatttttcaggttacctgtgattaatttttttctgcactttcttagagatcagtcgcttcatgggttgctatttgctagtgcgaat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA