Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGTGCCCCCCTCCATCGCCGGCGCCTCCTCCTCCGGGGCCAAGAAGGGCAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtccgcgtccgcgtccgccgatggcgcccgcgtctcgcttgttggctttctcgtgtgcgatctgatgcgattccgtcgcggttttcttcttcttcttcttctcgtgcag

Basic information

species Oryza sativa
transcript LOC_Os02g47870.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g47870.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G361074_T01 (Zea mays), 5'ss of exon 1
-GCCGTGCCCCCCTCCATCGCCGGCGCCT-CCTCCTCCGGGGCCAAGAAGGGCAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtccgcgtc-cgcgtccgccg-atggcgcccgcgtctcgc--ttgttggctttctcgtgtgc----gatctgatgcgattccgtcgcggttttcttcttcttcttcttctcgtgcag
 || | | |  | |    | ||||| ||| || || |||  || ||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||  |||| ||| || |||   ||||  ||||| | |||     |   || ||   ||     | | |    ||  |  |||||||  | |  ||||| |  | || | || | | |  ||||
GGCAGCGTCGTCGT--GCCCCCGGCCCCTGCCGCCGCCGCCGCGAAGAAGGCCAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgt--gcgtacgcatcgcgccatcgccacatggctctcgccctctgtgtttttttaattatatattttctcttgaattcgtgcgattt-gacttggttt-cggcctcgttttttgcgcccgcag

upper sequence: LOC_Os02g47870.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA12G32060.4 (Glycine max), 5'ss of exon 1
---GCCGTGCCCCCCTCCATCGCCGGCGCCTCCTCCTCCGGGGCCAAGAAGGGCAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtccgcgtccgcgtccgccgatggcgcccgcgtctcgcttgttggctttctcgtgtgcgatctgatgcgattccgtcgcggttttcttcttcttcttcttctcgtgcag
   | ||   || ||  || ||||||  | || || |||    ||||||||   ||||| |||||||||||||||||||| || || ||||||||||| ||||||  |||||    ||  |||   || |     ||    | ||  || ||  ||||||  |     || |  |    || | | || |                            
GCCGGCGAAGCCTCCAGCAGCGCCGGTCCTTCTTCGTCC---ACCAAGAAGCCGAAGCGTTTCGAGATCAAGAAGTGGAATGCGGTTTCCCTCTGGGCTTGGGgt--gcgtctctctcaacgttttcccaaac--cctaattttcttttcttttctttctttta----atttattattctttctttgcag----------------------------

upper sequence: LOC_Os02g47870.1 (Oryza sativa), 5'ss of exon 1
lower sequence: EFJ06425 (Selaginella moellendorffii), 5'ss of exon 1
--GCCGTGCCCCC-CTCCATCGCCGGCGCCTCCTCCTCCGGGGCCAAGAAGGGCAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtccgcgtccgcgtccgccgatggcgcccgcgtctcgcttgttggctttctcgtgtgcgatctgatgcgattccgtcgcggttttcttcttcttcttcttctcgtgcag
    || ||     ||||| |  ||||||      ||||   ||||||      ||||||||||||||||||||||||||||||||  | || ||||| ||||||||| |     |   |  | |   |   | |        ||||  |    |||||||  |                                                      
CCATCGGGCGAGGGCTCCAGCAGCGGCGCGAGTAGCTCC---GCCAAGCGCTCTAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTGGCGCTTTGGGCATGGGgtaaggg-----gattgtttgcattgtgagagattatcgatcgc--gccctctttctccag------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86602211|gb|CI262680.1|CI262680
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|86824548|gb|CI263034.1|CI263034
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|88584483|gb|CI702038.1|CI702038
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|87026736|gb|CI254842.1|CI254842
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|88310527|gb|CI659317.1|CI659317
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|163929443|gb|EG713412.1|EG713412
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|58586941|gb|CF985249.1|CF985249
EST:     CAAGCGCTTCGAGATCAAAAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGCACCTC
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGG-ACCTC
EST: gi|88355555|gb|CI679275.1|CI679275
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|86897276|gb|CI294334.1|CI294334
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|88591378|gb|CI707408.1|CI707408
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|88577100|gb|CI673655.1|CI673655
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|55434732|gb|CV730490.1|CV730490
EST:     AAGTC-TTTCGTTATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: AAG-CGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|86531631|gb|CI171837.1|CI171837
EST:     ATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: ATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|88572104|gb|CI663675.1|CI663675
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAANTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|88398748|gb|CI598713.1|CI598713
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|88329496|gb|CI648558.1|CI648558
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|58585864|gb|CF984172.1|CF984172
EST:     CAAGCGCTTCGAGATCAAAAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|86534249|gb|CI174455.1|CI174455
EST:     CGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|86431314|gb|CI084925.1|CI084925
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ATATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|55441579|gb|CV734113.1|CV734113
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGGCAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|88344293|gb|CI655687.1|CI655687
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|88346056|gb|CI633929.1|CI633929
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|88976245|gb|CI024462.1|CI024462
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|88305115|gb|CI652052.1|CI652052
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|88252851|gb|CI350276.1|CI350276
EST:     TGGAACGCTTTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: TGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|88848550|gb|CI087072.1|CI087072
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         AGATCGTCGTGGACAACTGCGCTATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|88385361|gb|CI630462.1|CI630462
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|88410530|gb|CI686468.1|CI686468
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|38478406|gb|CF962539.1|CF962539
EST:     CAAGCGCTTCGAGATCAAAAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|5004079|gb|AU069228.1|AU069228
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|88717453|gb|CI740963.1|CI740963
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|88451823|gb|CI694594.1|CI694594
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|25800584|gb|CA756545.1|CA756545
EST:     CAAGCGCTTCGAGATCAAAAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|15851044|gb|BI799320.1|BI799320
EST:     CAAGCGCTTCGAGATCAA-AAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|55437350|gb|CV731894.1|CV731894
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|33808930|gb|CF330351.1|CF330351
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|88360682|gb|CI647692.1|CI647692
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|88762328|gb|CI771884.1|CI771884
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|88571713|gb|CI663086.1|CI663086
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|88210386|gb|CI210235.1|CI210235
EST:     CAAGCGCTTTGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|88310490|gb|CI659280.1|CI659280
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|88338016|gb|CI676999.1|CI676999
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|86832305|gb|CI307521.1|CI307521
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|86846893|gb|CI283052.1|CI283052
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|88424041|gb|CI689740.1|CI689740
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|88348428|gb|CI629917.1|CI629917
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|58607531|gb|CK035564.1|CK035564
EST:     CAAGCGCTTCGAGATCAAAAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|88344290|gb|CI655684.1|CI655684
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|218496814|gb|FG947952.1|FG947952
EST:     CAAGCGCTTCGAGATCAAAAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|88358824|gb|CI649373.1|CI649373
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|55433516|gb|CV729865.1|CV729865
EST:     CAAGCGCTTCGATATTTTTAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|88485324|gb|CI422595.1|CI422595
EST:     CTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|86534541|gb|CI174747.1|CI174747
EST:     TGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: TGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|88340685|gb|CI647563.1|CI647563
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|55438491|gb|CV732542.1|CV732542
EST:     GAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ANATCGTCGTGGACAANTGCGCCATCTGCCGCAACCACATCATGGACCTNT
genomic: GAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|55438489|gb|CV732541.1|CV732541
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|87019232|gb|CI279742.1|CI279742
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|86889691|gb|CI299889.1|CI299889
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|88313926|gb|CI599928.1|CI599928
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|88739428|gb|CI762936.1|CI762936
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|88848429|gb|CI086951.1|CI086951
EST:     GAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ANATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: GAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|10423655|gb|AU108186.1|AU108186
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|56158480|gb|AU088576.2|AU088576
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|88305570|gb|CI631937.1|CI631937
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ANATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|88256243|gb|CI358631.1|CI358631
EST:     GTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: GTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|568841|gb|D39690.1|D39690
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|88590651|gb|CI707528.1|CI707528
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|58687844|gb|CK076531.1|CK076531
EST:     CAAGCGCTTCGAGATCAAAAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
EST: gi|88589297|gb|CI707165.1|CI707165
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGG                         ACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 54 (downstream exon)
Score: 42

GCCGTGCCCCCCTCCATCGCCGGCGCCTCCTCCTCCGGGGCCAAGAAGGGCAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtcc ... tctcgtgcagACATCGTCGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT




<











<


<









Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCGTGCCCCCCTCCATCGCCGGCGCCTCCTCCTCCGGGGCCAAGAAGGGCAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtccgcgtccgcgtccgccgatggcgcccgcgtctcgcttgttggctttctcgtgtgcgatctgatgcgattccgtcgcggttttcttcttcttcttcttctcgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA