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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCGCTCGTCTTCCAGATCACCACCGCCGTGGCCTCCTACCGCCGCCTCCTCAACTCGCTCGGGACGCCCAAGGACACCCCCGCCCTTCGTGACCAGCTgtctctcctcgctcccccccactcctcactcctttaattgttgtttgcctctacacgtttcatgtcctagaatgctagatgctcgcgattattattattt...

Basic information

species Oryza sativa
transcript LOC_Os02g47440.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g47440.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G108087_T01 (Zea mays), 5'ss of exon 1
GCGCGCTCGTCTTCCAGATCACCACCGCCGTGGCCTCCTACCGCCGCCTCCTCAACTCGCTCGGGACGCCCAAGGACACCCCCGCCCTTCGTGACCAGCTgtctctcctcgctcccccccactcctcactccttta---attgttgtttgcctctacacgt-ttcatgtcctagaatgctagatgctcgcgattattattattt
| ||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||  | | ||||||||  | |||||||||||||  ||| |  |  | | ||   | ||   ||    ||   ||  | |     ||      || || | ||||     |  |   | | | |   
GAGCGCTCGTCTTCCAGATAACCACCGCGGTGGCCTCGTACCGCCGCCTCCTCAACTCGCTCGGCACGCCCAAGGACACCATCACGCTTCGTGATAACCTgtctctcctcgagccctcttatgctttacatatctagcgatcagcgtaaacccttgcgtaaatttgctagcttgagtactagtaagccttgcccaat-tca---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|313084008|gb|HO213791.1|HO213791
EST:     CGCCCTTCGTGACCAGCT                         G
genomic: CGCCCTTCGTGACCAGCTgtctctcctc ... ccacaggcag-
EST: gi|313084008|gb|HO213791.1|HO213791
EST:     CGCCCTTCGTGACCAGCT                         G
genomic: CGCCCTTCGTGACCAGCTgtctctcctc ... ccacaggcag-
EST: gi|313084008|gb|HO213791.1|HO213791
EST:     CGCCCTTCGTGACCAGCT                         G
genomic: CGCCCTTCGTGACCAGCTgtctctcctc ... ccacaggcag-
EST: gi|313084008|gb|HO213791.1|HO213791
EST:     CGCCCTTCGTGACCAGCT                         G
genomic: CGCCCTTCGTGACCAGCTgtctctcctc ... ccacaggcag-
EST: gi|313084008|gb|HO213791.1|HO213791
EST:     CGCCCTTCGTGACCAGCT                         G
genomic: CGCCCTTCGTGACCAGCTgtctctcctc ... ccacaggcag-