Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTACCTGGTGGCAGGCGTGCCCGTCCCGCCGGATCTCGTGCTCCCCATCCGCCGCGGACTCGACTCCCTCGCCGCCCGCTTCTACAACCATCCCGCCCgtacgtcgtgttcctatttcttgcctctcctctaccatcgctgcattgcttttggatgcttgtttagtgtcggcttctttgtttattccgatcaggcgta...

Basic information

species Oryza sativa
transcript LOC_Os02g47280.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g47280.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G034876_T02 (Zea mays), 5'ss of exon 2
AAGTACCTGGTGGCAGGCGTGCCCGTCCCGCCGGATCTCGTGCTCCCCATCCGCCGCGGACTCGACTCCCTCGCCGCCCGCTTCTACAACCATCCCGCCCgtacgtc--gtgttcctatttcttgcctctc----ctctaccatcgctgcattgcttttggatgct-tgtttagtgtcggcttctttgtttattccgatcaggcgta
|||||||||||||| ||||||||||| ||||||||||||||| | || ||||||||||| ||||||||||||||  |||||||||||  ||| ||| | |||||||   |  || |  |  ||  ||||||    | || |||   || |||  | ||    | ||  ||   | ||  ||||   || ||  |||   |  |    
AAGTACCTGGTGGCGGGCGTGCCCGTTCCGCCGGATCTCGTGGTTCCAATCCGCCGCGGCCTCGACTCCCTCGCAACCCGCTTCTACGGCCAACCCACACgtacgtacggcatttccctccctctcctctcggcgccctgccag-actccatctccttcctgtactgcgtccggggt--gcttggctgcttgctccctccccg----