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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGCTGCGAGTACACCCTCGATGGCTCCGTGGATATCAAGGGCTCACCGGCGGTGAAGGGCAAGTCCGGCGGATGGCTCGCCGGCGGCCTTATTCTTCgtaagtactttgtgctgaactctgctgatttcaccatctccttcccggctgagacgggccagcaaaaaatggagacaaagtcgatgactgggctttccag...

Basic information

species Oryza sativa
transcript LOC_Os02g46460.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38468489|gb|CF952620.1|CF952620
EST:     GGCTCGCCGGCGG-CTTATTCTTC                         TGAACCAGGGTCTGGCAACCCTGGCGTTCTTCGGGGTAAACGTGAACCTGG
genomic: GGCTCGCCGGCGGCCTTATTCTTCgtaagtactt ... tgttgtgcagTGAACCAGGGTCTGGCAACCCTGGCGTTCTTCGGGGTAAACGTGAACCTGG
EST: gi|117249165|gb|CT862971.1|CT862971
EST:     GGCGGTGAAGGGCAAGTCCGGCGGATGGCTCGCCGGCGGCCTTATTCTTC                         TGAACCAGGGTCTGGCAACCCTGGCGTTCTTCGGGGTAAACGTGAACCTGG
genomic: GGCGGTGAAGGGCAAGTCCGGCGGATGGCTCGCCGGCGGCCTTATTCTTCgtaagtactt ... tgttgtgcagTGAACCAGGGTCTGGCAACCCTGGCGTTCTTCGGGGTAAACGTGAACCTGG
EST: gi|87005457|gb|CI285679.1|CI285679
EST:     GGCGGTGAAGGGCAAGTCCGGCGGATGGCTCGCCGGCGGCCTTATTCTTC                         TGAACCAGGGTCTGGCAACCCTGGCGTTCTTCGGGGTAAACGTGAACCTGG
genomic: GGCGGTGAAGGGCAAGTCCGGCGGATGGCTCGCCGGCGGCCTTATTCTTCgtaagtactt ... tgttgtgcagTGAACCAGGGTCTGGCAACCCTGGCGTTCTTCGGGGTAAACGTGAACCTGG