1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TCCTCTTCTTCCTCCTGCTCGGCTTCCTCACACAGAGCTTCTCGTTGCATTAGCCGACGGAGGCCACCGGTGAGGAGAGCCCGAGGAGGAGCAAGAAATGgttagtacgtgctcatgatttgatcgttcttggcatatatgttagcaaagctacacggtttcagcttgtttctgtagcttgttggtctgtagccaagattcagttttgtctccatgttcagtgatgaaacaccatgcgtatacatggcagcacatgaaactggaaactaactgacagcatgtaacttgatggttgcag
species | Oryza sativa |
transcript | LOC_Os02g46460.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TAG-CGACGGAGGCCACCGGTGAGGAGAGCCCGAGGAGGAGCAAGAAATG TCTGGCAACGACGGAGACATGAAGATGAGGGTGATCGTCGTGGAAGGCGATEST: gi|88367456|gb|CI566422.1|CI566422
genomic: TAGCCGACGGAGGCCACCGGTGAGGAGAGCCCGAGGAGGAGCAAGAAATGgttagtacgt ... atggttgcagTCTGGCAACGACGGAGACATGAAGATGAGGGTGATCGTCGTGGAAGGCGAT
EST: TAGCCGACGGAGGCCACCGGTGAGGAGAGCCCGAGGAGGAGCAAGAAATG TCTGGCAACGACGGAGACATGAAGATGAGGGTGATCGTCGTGGAAGGCGATEST: gi|88591225|gb|CI708147.1|CI708147
genomic: TAGCCGACGGAGGCCACCGGTGAGGAGAGCCCGAGGAGGAGCAAGAAATGgttagtacgt ... atggttgcagTCTGGCAACGACGGAGACATGAAGATGAGGGTGATCGTCGTGGAAGGCGAT
EST: TAGCCGACGGAGGCCACCGGTGAGGAGAGCCCGAGGAGGAGCAAGAAATG TCTGGCAACGACGGAGACATGAAGATGAGGGTGATCGTCGTGGAAGGCGATEST: gi|88301127|gb|CI594653.1|CI594653
genomic: TAGCCGACGGAGGCCACCGGTGAGGAGAGCCCGAGGAGGAGCAAGAAATGgttagtacgt ... atggttgcagTCTGGCAACGACGGAGACATGAAGATGAGGGTGATCGTCGTGGAAGGCGAT
EST: TAGCCGACGGAGGCCACCGGTGAGGAGAGCCCGAGGAGGAGCAAGAAATG TCTGGCAACGACGGAGACATGAAGATGAGGGTGATCGTCGTGGAAGGCGATEST: gi|13536854|gb|AU181076.1|AU181076
genomic: TAGCCGACGGAGGCCACCGGTGAGGAGAGCCCGAGGAGGAGCAAGAAATGgttagtacgt ... atggttgcagTCTGGCAACGACGGAGACATGAAGATGAGGGTGATCGTCGTGGAAGGCGAT
EST: TAGCCGACGGAGGCCACCGGTGAGGAGAGCCCGAGGAGGAGCAAGAAATG TCTGGCAACGACGGAGACATGAAGATGAGGGTGATCGTCGTGGAAGGCGATEST: gi|88357991|gb|CI650727.1|CI650727
genomic: TAGCCGACGGAGGCCACCGGTGAGGAGAGCCCGAGGAGGAGCAAGAAATGgttagtacgt ... atggttgcagTCTGGCAACGACGGAGACATGAAGATGAGGGTGATCGTCGTGGAAGGCGAT
EST: TAGCCGACGGAGGCCACCGGTGAGGAGAGCCCGAGGAGGAGCAAGAAATG TCTGGCAACGACGGAGACATGAAGATGAGGGTGATCGTCGTGGAAGGCGAT
genomic: TAGCCGACGGAGGCCACCGGTGAGGAGAGCCCGAGGAGGAGCAAGAAATGgttagtacgt ... atggttgcagTCTGGCAACGACGGAGACATGAAGATGAGGGTGATCGTCGTGGAAGGCGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTCTTCTTCCTCCTGCTCGGCTTCCTCACACAGAGCTTCTCGTTGCATTAGCCGACGGAGGCCACCGGTGAGGAGAGCCCGAGGAGGAGCAAGAAATGgttagtacgtgctcatgatttgatcgttcttggcatatatgttagcaaagctacacggtttcagcttgtttctgtagcttgttggtctgtagccaagattcagttttgtctccatgttcagtgatgaaacaccatgcgtatacatggcagcacatgaaactggaaactaactgacagcatgtaacttgatggttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA