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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGGTGCAGAGATAAACCAACTGCAATGGGCGGCAGCTTACCCGGAGTGGATATCGATTGCCTTTGAGAACAAGGTCCAGCTTCTCAGGGTCTGACGAGgttggttcctttggcccttcatggttcaaatagtctattgattcatagcataatatttttaagattgaataatgctgattctaaacattagtattagatt...

Basic information

species Oryza sativa
transcript LOC_Os02g45810.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g45810.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G058292_T01 (Zea mays), 5'ss of exon 1
GCCGGTGCAGAGATAAACCAACTGCAATGGGCGGCAGCTTACCCGGAGTGGATATCGATTGCCTTTGAGAACAAGGTCCAGCTTCTCAGGGTCTGACGAGgttggttcctttggcccttcatggttcaaatagtctattgattcatagcataatatttttaagattgaataatgctgatt---ctaaacattagtattagatt
|| || || || ||||||||||| || |||||||| ||  ||||||| |||||  | || |||||||||||||||||||||||||| |||||||||| ||||||||  | | ||   |   |||||  |    |  |||  |  ||||  |  | ||  | |  |  |  |||   ||||   ||||   |  || || ||| 
GCAGGCGCCGAAATAAACCAACTTCAGTGGGCGGCCGCGCACCCGGACTGGATGGCCATCGCCTTTGAGAACAAGGTCCAGCTTCTTAGGGTCTGACAAGgttggtatcat-ggtgatctttggtttgatgctttcatttctatatagt-ttctgttgattatgtcaataaatttagatttaactaagggtctgt-ttggatg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88249611|gb|CI249460.1|CI249460
EST:     GATATCGATTGCCTTTGAGAACAAGGTCCAGCTTCTCAGGGTCTGACGAG                         GTGTAAATTCCCATCACAACAAGAGCCAACAAGGTATTTTGTTCAACATCA
genomic: GATATCGATTGCCTTTGAGAACAAGGTCCAGCTTCTCAGGGTCTGACGAGgttggttcct ... tgtttacaagGTGTAAATTCCCATCACAACAAGAGCCAACAAGGTATTTTGTTCAACATCA