1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATCGCAGAGTTATTCTCCTCCCTCCTCTTGGAAGGCTGTGAAATCCTCCCTGGCGCTGCTAAGCCTCCGAGCTCCCTCCGAGCTTCCGAGCCATCTCAAGgtgaggggaagttttttactcaaaactcgcaagctacactcccgtagttgtatccattcggtgaggcgctgttaggaagtttactatagcacgtgtagct...
species | Oryza sativa |
transcript | LOC_Os02g44570.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGGCGCTGCTAAGCCTCCGAGCTCCCTCCGAGCTTCCGAGCCATCTCAAG ATCTCAGTCAGTCGATTGCTAGCTTTCCTTTATGACCTTGCTGCTAGCTTGEST: gi|29634370|gb|CB639379.1|CB639379
genomic: TGGCGCTGCTAAGCCTCCGAGCTCCCTCCGAGCTTCCGAGCCATCTCAAGgtgaggggaa ... cctctagcagATCTCAGTCAGTTGATTACTAGCTTTCCTTTATGACCTTGCTGCTAGCTTG
EST: TGGCGCTGCTAAGCCTCCGAGCTCCCTCCGAGCTTCCGAGCCATCTCAAG ATCTCAGTCAGTTGATTACTAGCTTTCCTTTATGACCTTGCTGCTAGCTTGEST: gi|33678450|gb|CF306689.1|CF306689
genomic: TGGCGCTGCTAAGCCTCCGAGCTCCCTCCGAGCTTCCGAGCCATCTCAAGgtgaggggaa ... cctctagcagATCTCAGTCAGTTGATTACTAGCTTTCCTTTATGACCTTGCTGCTAGCTTG
EST: TGGCGCTGCTAAGCCTCCGAGCTCCCTCCGAGCTTCCGAGCCATCTCAAG CEST: gi|33678450|gb|CF306689.1|CF306689
genomic: TGGCGCTGCTAAGCCTCCGAGCTCCCTCCGAGCTTCCGAGCCATCTCAAGgtgaggggaa ... cctctagcag-
EST: TGGCGCTGCTAAGCCTCCGAGCTCCCTCCGAGCTTCCGAGCCATCTCAAG CEST: gi|88407141|gb|CI581228.1|CI581228
genomic: TGGCGCTGCTAAGCCTCCGAGCTCCCTCCGAGCTTCCGAGCCATCTCAAGgtgaggggaa ... cctctagcag-
EST: TGGCGCTGCTAAGCCTCCGAGCTCCCTCCGAGCTTCCGAGCCATCTCAAG ATCTCAGTCAGTTGATTACTAGCTTTCCTTTATGACCTTGCTGCTAGCTTGEST: gi|117240814|gb|CT842841.1|CT842841
genomic: TGGCGCTGCTAAGCCTCCGAGCTCCCTCCGAGCTTCCGAGCCATCTCAAGgtgaggggaa ... cctctagcagATCTCAGTCAGTTGATTACTAGCTTTCCTTTATGACCTTGCTGCTAGCTTG
EST: TGGCGCTGCTAAGCCTCCGAGCTCCCTCCGAGCTTCCGAGCCATCTCAAG ATCTCAGTCAGTCGATTGCTAGCTTTCCTTTATGACCTTGCTGCTAGCTTG
genomic: TGGCGCTGCTAAGCCTCCGAGCTCCCTCCGAGCTTCCGAGCCATCTCAAGgtgaggggaa ... cctctagcagATCTCAGTCAGTTGATTACTAGCTTTCCTTTATGACCTTGCTGCTAGCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCGCAGAGTTATTCTCCTCCCTCCTCTTGGAAGGCTGTGAAATCCTCCCTGGCGCTGCTAAGCCTCCGAGCTCCCTCCGAGCTTCCGAGCCATCTCAAGgtgaggggaagttttttactcaaaactcgcaagctacactcccgtagttgtatccattcggtgaggcgctgttaggaagtttactatagcacgtgtagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgagg