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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGCTCCTCTTCTCCTCCACGGCGGCTGCGCGGCGTCGTCCCGCTCCACCGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCCGgtgaggaagccagcctttgccctagctatgtagctcgtgttttcgttgggtttcctgtgcttttttttttttaatttgtggccgcaaacggtgggatcca...

Basic information

species Oryza sativa
transcript LOC_Os02g43930.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29673001|gb|CB669276.1|CB669276
EST:     CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCCGGAAG                      
genomic: CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCC----Ggtgaggaagc ... ttgtagg
EST: gi|58655503|gb|CK044183.1|CK044183
EST:     CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCCGGAAG                      
genomic: CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCC----Ggtgaggaagc ... ttgtagg
EST: gi|58666150|gb|CK054836.1|CK054836
EST:     CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCCGGAAG                      
genomic: CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCC----Ggtgaggaagc ... ttgtagg
EST: gi|58658345|gb|CK051083.1|CK051083
EST:     GGTGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCCGGAAG                      
genomic: GG-GCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCC----Ggtgaggaagc ... ttgtagg
EST: gi|58601753|gb|CK012281.1|CK012281
EST:     CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCCGGAAG                      
genomic: CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCC----Ggtgaggaagc ... ttgtagg
EST: gi|58663897|gb|CK052583.1|CK052583
EST:     CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCCGGAAG                      
genomic: CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCC----Ggtgaggaagc ... ttgtagg
EST: gi|58604589|gb|CK015117.1|CK015117
EST:     CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCCGGAAG                      
genomic: CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCC----Ggtgaggaagc ... ttgtagg
EST: gi|58602101|gb|CK012629.1|CK012629
EST:     CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCCG                         G
genomic: CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCCGgtgaggaagc ... ttgtaggaag-
EST: gi|58602101|gb|CK012629.1|CK012629
EST:     CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCCG                         G
genomic: CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCCGgtgaggaagc ... ttgtaggaag-
EST: gi|58602101|gb|CK012629.1|CK012629
EST:     CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCCG                         G
genomic: CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCCGgtgaggaagc ... ttgtaggaag-
EST: gi|58602101|gb|CK012629.1|CK012629
EST:     CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCCG                         G
genomic: CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCCGgtgaggaagc ... ttgtaggaag-
EST: gi|58602101|gb|CK012629.1|CK012629
EST:     CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCCG                         G
genomic: CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCCGgtgaggaagc ... ttgtaggaag-
EST: gi|58664824|gb|CK053510.1|CK053510
EST:     CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCCG                         CCCTTTTTATCAGTCATGTACGGACGCATGCCAAAGAAGAGTAACAATACC
genomic: CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCCGgtgaggaagc ... ttgtaggaagCCCTTTTTATCAGTCATGTACGGACGCATGCCAAAGAAGAGTAACAATACC
EST: gi|29619928|gb|CB624940.1|CB624940
EST:     CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCCGGAAG                      
genomic: CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCC----Ggtgaggaagc ... ttgtagg
EST: gi|58679094|gb|CK067781.1|CK067781
EST:     CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCCGGAAG                      
genomic: CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCC----Ggtgaggaagc ... ttgtagg
EST: gi|33796281|gb|CF324007.1|CF324007
EST:     CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCCGGAAG                      
genomic: CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCC----Ggtgaggaagc ... ttgtagg
EST: gi|58687630|gb|CK076317.1|CK076317
EST:     GGTCGCTTCTTCCTCTTCCGGAAG                      
genomic: GGTCGCTTCTTCCTCTTCC----Ggtgaggaagc ... ttgtagg
EST: gi|88343932|gb|CI654968.1|CI654968
EST:     CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCCGGAAG                      
genomic: CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCC----Ggtgaggaagc ... ttgtagg
EST: gi|58660176|gb|CK048856.1|CK048856
EST:     CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCCGGAAG                      
genomic: CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCC----Ggtgaggaagc ... ttgtagg
EST: gi|29683463|gb|CB679738.1|CB679738
EST:     GCTTCTTCCTCTTCCGGAAG                      
genomic: GCTTCTTCCTCTTCC----Ggtgaggaagc ... ttgtagg
EST: gi|29631437|gb|CB636446.1|CB636446
EST:     CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCCGGAAG                      
genomic: CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCC----Ggtgaggaagc ... ttgtagg
EST: gi|58600729|gb|CK011257.1|CK011257
EST:     CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCCG                         G
genomic: CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCCGgtgaggaagc ... ttgtaggaag-
EST: gi|58600729|gb|CK011257.1|CK011257
EST:     CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCCG                         G
genomic: CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCCGgtgaggaagc ... ttgtaggaag-
EST: gi|58600729|gb|CK011257.1|CK011257
EST:     CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCCG                         G
genomic: CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCCGgtgaggaagc ... ttgtaggaag-
EST: gi|58600729|gb|CK011257.1|CK011257
EST:     CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCCG                         G
genomic: CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCCGgtgaggaagc ... ttgtaggaag-
EST: gi|58600729|gb|CK011257.1|CK011257
EST:     CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCCG                         G
genomic: CGGGCCGTCGTCTGGATCTGATCTAGGAGCGGTCGCTTCTTCCTCTTCCGgtgaggaagc ... ttgtaggaag-