1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCCTGCTCTTCCAATTCCTCATGCAAATTTCTTTCAGTTCAATTCAGTTCCTGGAAAGAAAGGCCGGATTTTACTCTGAACGAAGACAACGAAGGGAAAGgtaatatcatctcttctgtaatgcagcgaattatgcatatttgggcgtcctttcagttcaatttgtttgatcag
species | Oryza sativa |
transcript | LOC_Os02g43594.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTGGAAAGAAAGGCCGGATTTTACTCTGAACGAAGACAACGAAGGGAAAG GTGTGGCAATGGGTGGCGGCGGAACGCTGATCTCCATCTACCCCGAGGACCEST: gi|88401755|gb|CI591082.1|CI591082
genomic: CTGGAAAGAAAGGCCGGATTTTACTCTGAACGAAGACAACGAAGGGAAAGgtaatatcat ... gtttgatcagGTGTGGCAATGGGTGGCGGCGGAACGCTGATCTCCATCTACCCCGAGGACC
EST: CTGGAAAGAAAGGCCGGATTTTACTCTGAACGAAGACAACGAAGGGAAAG GTGTGGCAATGGGTGGCGGGGGAACGCTGATCTCCATCTACCCCGAGGACCEST: gi|88389102|gb|CI595336.1|CI595336
genomic: CTGGAAAGAAAGGCCGGATTTTACTCTGAACGAAGACAACGAAGGGAAAGgtaatatcat ... gtttgatcagGTGTGGCAATGGGTGGCGGCGGAACGCTGATCTCCATCTACCCCGAGGACC
EST: CTGGAAAGAAAGGCCGGATTTTACTCTGAACGAAGACAACGAAGGGAAAG GTGTGGCAATGGGTGGCGGCGGAACGCTGATCTCCATCTACCCCGAGGACCEST: gi|88405086|gb|CI685534.1|CI685534
genomic: CTGGAAAGAAAGGCCGGATTTTACTCTGAACGAAGACAACGAAGGGAAAGgtaatatcat ... gtttgatcagGTGTGGCAATGGGTGGCGGCGGAACGCTGATCTCCATCTACCCCGAGGACC
EST: CTGGAAAGAAAGGCCGGATTTTACTCTGAACGAAGACAACGAAGGGAAAG GTGTGGCAATGGGTGGCGGCGGAACGCTGATCTCCATCTACCCCGAGGACCEST: gi|88581198|gb|CI698173.1|CI698173
genomic: CTGGAAAGAAAGGCCGGATTTTACTCTGAACGAAGACAACGAAGGGAAAGgtaatatcat ... gtttgatcagGTGTGGCAATGGGTGGCGGCGGAACGCTGATCTCCATCTACCCCGAGGACC
EST: CTGGAAAGAAAGGCCGGATTTTACTCTGAACGAAGACAACGAAGGGAAAG GTGTGGCAATGGGTGGCGGCGGAACGCTGATCTCCATCTACCCCGAGGACC
genomic: CTGGAAAGAAAGGCCGGATTTTACTCTGAACGAAGACAACGAAGGGAAAGgtaatatcat ... gtttgatcagGTGTGGCAATGGGTGGCGGCGGAACGCTGATCTCCATCTACCCCGAGGACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTGCTCTTCCAATTCCTCATGCAAATTTCTTTCAGTTCAATTCAGTTCCTGGAAAGAAAGGCCGGATTTTACTCTGAACGAAGACAACGAAGGGAAAGgtaatatcatctcttctgtaatgcagcgaattatgcatatttgggcgtcctttcagttcaatttgtttgatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA