1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TCCAGTGGACATTAAGACACCATATGAAAAAATGGTGGAGAATAGTGTTGAGTTTGGGTCGCCGGACAAAAGGTCTGGTGGCTTGCTCAATTCGGCTTTGgtaaggcactacagctgaaaaataaatttgttatacgtgtggtatttttaggctggatatcttagtatagggaaagcaataatcacatcagaacatagat...
species | Oryza sativa |
transcript | LOC_Os02g43350.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGTTTGGGTCGCCGGACAAAAGGTCTGGTGGCTTGCTCAATTCGGCTTTG GTGGCTCTTATTTATGTTGTATTAATTGCTGTAGTTCTGCAGCGATTGCCAEST: gi|58688521|gb|CK077208.1|CK077208
genomic: AGTTTGGGTCGCCGGACAAAAGGTCTGGTGGCTTGCTCAATTCGGCTTTGgtaaggcact ... ttttttgcagGTGGCTCTTATTTATGTTGTATTAATTGCTGTAGTTCTGCAGCGATTGCCA
EST: AGTTTGGGTCGCCGGACAAAAGGTCTGGTGGCTTGCTCAATTCGGCTTTG GTGGCTCTTATTTATGTTGTATTAATTGCTGTAGTTCTGCAGCGATTGCCAEST: gi|28298256|gb|CB238486.1|CB238486
genomic: AGTTTGGGTCGCCGGACAAAAGGTCTGGTGGCTTGCTCAATTCGGCTTTGgtaaggcact ... ttttttgcagGTGGCTCTTATTTATGTTGTATTAATTGCTGTAGTTCTGCAGCGATTGCCA
EST: AGTTTGGGTCGCCGGACAAAAGGTCTGGTGGCTTGCTCAATTCGGCTTTG GTGGCTCTTATTTATGTTGTATTAEST: gi|29630418|gb|CB635427.1|CB635427
genomic: AGTTTGGGTCGCCGGACAAAAGGTCTGGTGGCTTGCTCAATTCGGCTTTGgtaaggcact ... ttttttgcagGTGGCTCTTATTTATGTTGTATTA
EST: AGTTTGGGTCGCCGGACAAAAGGTCTGGTGGCTTGCTCAATTCGGCTTTG GTGGCTCTTATTTATGTTGTATTAATTGCTGTAGTTCTGCAGCGATTGCCAEST: gi|29630416|gb|CB635425.1|CB635425
genomic: AGTTTGGGTCGCCGGACAAAAGGTCTGGTGGCTTGCTCAATTCGGCTTTGgtaaggcact ... ttttttgcagGTGGCTCTTATTTATGTTGTATTAATTGCTGTAGTTCTGCAGCGATTGCCA
EST: AGTTTGGGTCGCCGGACAAAAGGTCTGGTGGCTTGCTCAATTCGGCTTTG GTGGCTCTTATTTATGTTGTATTAATTGCTGTAGTTCTGCAGCGATTGCCA
genomic: AGTTTGGGTCGCCGGACAAAAGGTCTGGTGGCTTGCTCAATTCGGCTTTGgtaaggcact ... ttttttgcagGTGGCTCTTATTTATGTTGTATTAATTGCTGTAGTTCTGCAGCGATTGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCAGTGGACATTAAGACACCATATGAAAAAATGGTGGAGAATAGTGTTGAGTTTGGGTCGCCGGACAAAAGGTCTGGTGGCTTGCTCAATTCGGCTTTGgtaaggcactacagctgaaaaataaatttgttatacgtgtggtatttttaggctggatatcttagtatagggaaagcaataatcacatcagaacatagat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaata