1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCAGGACGGTATGGTGTTTAGGCAGAACTTCATGATTCGGTCCTACGAGATTGGCGCTGATCGTACAGCTTCTATAGAGACATTGATGAATCATTTACAGgtaagtggttgcacattctgtttttagtttcatttctcatttcagcattttgttatagattcgtatgtctctttcaagctggcaattatttaaaattttgcag
species | Oryza sativa |
transcript | LOC_Os02g43090.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTGGCGCTGATCGTACAGCTTCTATAGAGACATTGATGAATCATTTACAG GAAACGGCTCTTAACCATGTAAGGACTGCTGGTCTTCTTGGAGATGGTTTTEST: gi|29643342|gb|CB648349.1|CB648349
genomic: TTGGCGCTGATCGTACAGCTTCTATAGAGACATTGATGAATCATTTACAGgtaagtggtt ... aattttgcagGAAACGGCTCTTAACCATGTAAGGACTGCTGGTCTTCTTGGAGATGGTTTT
EST: TTGGCGCTGATCGTACAGCTTCTATAGAGACATTGATGAATCATTTACAG GAAACGGCTCTTAACCATGTAAGGACTGCTGGTCTTCTTGGAGATGGTTTTEST: gi|29665019|gb|CB661294.1|CB661294
genomic: TTGGCGCTGATCGTACAGCTTCTATAGAGACATTGATGAATCATTTACAGgtaagtggtt ... aattttgcagGAAACGGCTCTTAACCATGTAAGGACTGCTGGTCTTCTTGGAGATGGTTTT
EST: TTGGTGCTGATCGTACAGCTTCTATAGAGACATTGATGAATCATTTACAG GAAACAGCTCTTAACCATGTGAGGACTGCTGGCCTTCTTGGAGATGGTTTT
genomic: TTGGCGCTGATCGTACAGCTTCTATAGAGACATTGATGAATCATTTACAGgtaagtggtt ... aattttgcagGAAACGGCTCTTAACCATGTAAGGACTGCTGGTCTTCTTGGAGATGGTTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAGGACGGTATGGTGTTTAGGCAGAACTTCATGATTCGGTCCTACGAGATTGGCGCTGATCGTACAGCTTCTATAGAGACATTGATGAATCATTTACAGgtaagtggttgcacattctgtttttagtttcatttctcatttcagcattttgttatagattcgtatgtctctttcaagctggcaattatttaaaattttgcag
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