1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCGCCATCGCACTCCACCTCGGGTGAAAGCCGGCGCCTTTTGGATCACCCCTCTCCTCCGATCGACCGGGTCTCTGCTGAGGTCTCCACGCCGCCGACAGgtagcgcgaggtaagggggaaaaatattggcttcttggtcaccggtttggatgtggccagtgtgtggatttcgtgatcagtgggtgtttcttgggtcctg...
species | Oryza sativa |
transcript | LOC_Os02g40890.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTCTCCTCCGATCGACCGGGTCTCTGCTGAGGTCTCCACGCCGCCGACAG CTAGAGAGATGGCCGAGACAGTGTTCACTCCCTCGTTGGAGGGTATGAAGCEST: gi|396941507|gb|HO188716.1|HO188716
genomic: CTCTCCTCCGATCGACCGGGTCTCTGCTGAGGTCTCCACGCCGCCGACAGgtagcgcgag ... tctattgcagCTAGAGAGATGGCCGAGACAGTGTTCACTCCCTCGTTGGAGGGTATGAAGC
EST: CTCTCCTCCGATCGACCGGGTCTCTGCTGAGGTCTCCACGCCGCCGACAGGTAGCGCGAGEST: gi|33807484|gb|CF329619.1|CF329619
genomic: CTCTCCTCCGATCGACCGGGTCTCTGCTGAGGTCTCCACGCCG-C--C--G-A---C-AGgtagcgcgag ... t
EST: CTCTCCTCCGATCGACCGGGTCTCTGCTGAGGTCTCCACGCCGCCGACAGGTAGCGCGAGEST: gi|66914261|gb|CX101109.1|CX101109
genomic: CTCTCCTCCGATCGACCGGGTCTCTGCTGAGGTCTCCACGCCG-C--C--G-A---C-AGgtagcgcgag ... t
EST: ATCGACCGGGTCTCTGCTGAGGTCTCCACGCCGCCGGCAGGTAGCGCGAG CTAGAGAGATGGCCGAGACAGTGTTCACTCCCTCGTTGGAGGGTATGAAG
genomic: ATCGACCGGGTCTCTGCTGAGGTCTCCACGCCG-C--C--G-A---C-AGgtagcgcgag ... tctattgcagCTAGAGAGATGGCCGAGACAGTGTTCACTCCCTCGTTGGAGGGTATGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGCCATCGCACTCCACCTCGGGTGAAAGCCGGCGCCTTTTGGATCACCCCTCTCCTCCGATCGACCGGGTCTCTGCTGAGGTCTCCACGCCGCCGACAGgtagcgcgaggtaagggggaaaaatattggcttcttggtcaccggtttggatgtggccagtgtgtggatttcgtgatcagtgggtgtttcttgggtcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggggaa