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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGGCGGGGGCGGCGGCGGCGACGATGCCGCGCTGTTCAAGGGGTCCGCCATGACGCGGCGCGGCGCGGTCGCCGCGCTCTCCTACATGGCCTGCTCCGgtacgttcccccgatccgcgccgcttcttcttcttcttcttctctgatgcgtcggctgggtctcgggatgcggtcgtcgttagcgagaatttgagggtgg...

Basic information

species Oryza sativa
transcript LOC_Os02g40030.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g40030.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G133226_T04 (Zea mays), 5'ss of exon 1
GGGGGCGGGGGCGGCGGCGGCGACGATGCCGCGCTGTTCAAGGGGTCCGCCATGACGCGGCGCGGCGCGGTCGCCGCGCTCTCCTACATGGCCTGCTCCGgtacgttcc-cccgatccgcgccgcttcttcttcttcttcttctc-tgatgcgtcggctgggtctcgggatgcggt-cgtcgttagcgagaatttgagggtgg
   ||||| || |  |||||||||||||||| |||||||||||||||||||||||| || |||||||    |||||||||||| |||||||| ||||||||||||  |  |   ||  ||   | ||||    | |   || |||  | |||| | |   | |   ||    | || | ||||| |      |  | |  |  
AACGGCGGAGGGGCAGGCGGCGACGATGCCGTGCTGTTCAAGGGGTCCGCCATGACCCGCCGCGGCGGCACCGCCGCGCTCTCTTACATGGCATGCTCCGgtacgcgcggctttatttgc-ttgtttctgtcgcgtagactgctcgcggtgcggccgt--gctgctggtgcactgtgcttcgttcgtcgcgttcagggaattt

upper sequence: LOC_Os02g40030.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G020976_T01 (Zea mays), 5'ss of exon 1
GGGGGCGGGGGCGGCGGCGGCGACGATGCCGCGCTGTTCAAGGGGTCCGCCATGACGCGGCGCGGCGCGGTCGCCGCGCTCTCCTACATGGCCTGCTCCGgtacgttcc---cccgatccgcgccgcttc----ttcttcttcttcttctctgatgcgtcggctgggtctcgggatgcggtcgtcgttagcgagaatttgagggtgg
   | ||| || || ||||||||||| |||| |||||||||||||||||||||||| || || ||||  | ||| ||||||||||||||||| ||||||||||||  |    |||||||| ||||    |    | |||| | | ||| |||   | | |||| | | | |     || | ||| |   ||  |   ||  ||||  
AACGACGGAGGGGGAGGCGGCGACGACGCCGTGCTGTTCAAGGGGTCCGCCATGACCCGCCGAGGCGGCGCCGCGGCGCTCTCCTACATGGCATGCTCCGgtacgcgctacgcccgatcctcgccctcccgggctgcttcgtttgcttgtctccgggggcggccgcgccgc----cgccg-cgtggactgctcgcgctttcgggt--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88422800|gb|CI573962.1|CI573962
EST:     CATGACGCGGCGCGGCGCGGTCGCCGCGCTCTCCTACATGGCCTGCTCCG                         TGTTGCTAGTGATGTTTAACAAAGCAGCACTGTCTTCATATAATTTCCCCT
genomic: CATGACGCGGCGCGGCGCGGTCGCCGCGCTCTCCTACATGGCCTGCTCCGgtacgttccc ... caatccgcagTGTTGCTAGTGATGTTTAACAAAGCAGCACTGTCTTCATATAATTTCCCCT
EST: gi|58667565|gb|CK056251.1|CK056251
EST:     GCCGCGCTCTCCTACATGGCCTGCTCCCG                         TG-TGCTAGTGATGTTTAACAAAGCAGCACTGTCTTCATATAATTTCCCC
genomic: GCCGCGCTCTCCTACATGGCCTGCT-CCGgtacgttccc ... caatccgcagTGTTGCTAGTGATGTTTAACAAAGCAGCACTGTCTTCATATAATTTCCCC
EST: gi|88422801|gb|CI573963.1|CI573963
EST:     CATGACGCGGCGCGGCGCGGTCGCCGCGCTCTCCTACATGGCCTGCTCCG                         TGTTGCTAGTGATGTTTAACAAAGCAGCACTGTCTTCATATAATTTACCCT
genomic: CATGACGCGGCGCGGCGCGGTCGCCGCGCTCTCCTACATGGCCTGCTCCGgtacgttccc ... caatccgcagTGTTGCTAGTGATGTTTAACAAAGCAGCACTGTCTTCATATAATTTCCCCT