1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGGGGCGGGGGCGGCGGCGGCGACGATGCCGCGCTGTTCAAGGGGTCCGCCATGACGCGGCGCGGCGCGGTCGCCGCGCTCTCCTACATGGCCTGCTCCGgtacgttcccccgatccgcgccgcttcttcttcttcttcttctctgatgcgtcggctgggtctcgggatgcggtcgtcgttagcgagaatttgagggtgg...
species | Oryza sativa |
transcript | LOC_Os02g40030.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CATGACGCGGCGCGGCGCGGTCGCCGCGCTCTCCTACATGGCCTGCTCCG TGTTGCTAGTGATGTTTAACAAAGCAGCACTGTCTTCATATAATTTCCCCTEST: gi|88422800|gb|CI573962.1|CI573962
genomic: CATGACGCGGCGCGGCGCGGTCGCCGCGCTCTCCTACATGGCCTGCTCCGgtacgttccc ... caatccgcagTGTTGCTAGTGATGTTTAACAAAGCAGCACTGTCTTCATATAATTTCCCCT
EST: CATGACGCGGCGCGGCGCGGTCGCCGCGCTCTCCTACATGGCCTGCTCCG TGTTGCTAGTGATGTTTAACAAAGCAGCACTGTCTTCATATAATTTCCCCTEST: gi|58667565|gb|CK056251.1|CK056251
genomic: CATGACGCGGCGCGGCGCGGTCGCCGCGCTCTCCTACATGGCCTGCTCCGgtacgttccc ... caatccgcagTGTTGCTAGTGATGTTTAACAAAGCAGCACTGTCTTCATATAATTTCCCCT
EST: GCCGCGCTCTCCTACATGGCCTGCTCCCG TG-TGCTAGTGATGTTTAACAAAGCAGCACTGTCTTCATATAATTTCCCCEST: gi|88422801|gb|CI573963.1|CI573963
genomic: GCCGCGCTCTCCTACATGGCCTGCT-CCGgtacgttccc ... caatccgcagTGTTGCTAGTGATGTTTAACAAAGCAGCACTGTCTTCATATAATTTCCCC
EST: CATGACGCGGCGCGGCGCGGTCGCCGCGCTCTCCTACATGGCCTGCTCCG TGTTGCTAGTGATGTTTAACAAAGCAGCACTGTCTTCATATAATTTACCCT
genomic: CATGACGCGGCGCGGCGCGGTCGCCGCGCTCTCCTACATGGCCTGCTCCGgtacgttccc ... caatccgcagTGTTGCTAGTGATGTTTAACAAAGCAGCACTGTCTTCATATAATTTCCCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGGGCGGGGGCGGCGGCGGCGACGATGCCGCGCTGTTCAAGGGGTCCGCCATGACGCGGCGCGGCGCGGTCGCCGCGCTCTCCTACATGGCCTGCTCCGgtacgttcccccgatccgcgccgcttcttcttcttcttcttctctgatgcgtcggctgggtctcgggatgcggtcgtcgttagcgagaatttgagggtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccccga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccgcgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcgtcgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagggtg