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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTATAAATCGCACCCGGAAAAGATCACCATCCATTGCCCAATTCGCCGTCGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctccctcctcctcctcatccacactgcttagattcctctttggtggttgatcggttccgtagcagagttctgcgcgatcggtttttccattgct...

Basic information

species Oryza sativa
transcript LOC_Os02g38840.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88416098|gb|CI594210.1|CI594210
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88411864|gb|CI571356.1|CI571356
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|25798694|gb|CA754655.1|CA754655
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCNAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88415057|gb|CI601889.1|CI601889
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88317248|gb|CI626891.1|CI626891
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88304205|gb|CI599893.1|CI599893
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88351991|gb|CI625991.1|CI625991
EST:     CGTCGTCTTCTTCTTCCAACTCGGGAAGTCAAATCTCGTCGCCATTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|29635730|gb|CB640739.1|CB640739
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88296133|gb|CI667523.1|CI667523
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88443530|gb|CI596997.1|CI596997
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88581858|gb|CI699072.1|CI699072
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88316673|gb|CI622919.1|CI622919
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88354469|gb|CI624859.1|CI624859
EST:     GTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACGTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATC
genomic: GTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCAC-TGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATC
EST: gi|86902329|gb|CI302360.1|CI302360
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88737626|gb|CI761134.1|CI761134
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88302319|gb|CI668165.1|CI668165
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88365346|gb|CI679980.1|CI679980
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88424133|gb|CI689838.1|CI689838
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88403767|gb|CI611422.1|CI611422
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88432690|gb|CI690532.1|CI690532
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88745922|gb|CI769282.1|CI769282
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88350091|gb|CI622022.1|CI622022
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88290542|gb|CI666915.1|CI666915
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88362870|gb|CI614226.1|CI614226
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88395088|gb|CI609404.1|CI609404
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88362236|gb|CI608627.1|CI608627
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88735725|gb|CI759233.1|CI759233
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88590482|gb|CI709344.1|CI709344
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88444015|gb|CI589643.1|CI589643
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88403178|gb|CI570919.1|CI570919
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88301179|gb|CI594705.1|CI594705
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88578590|gb|CI687528.1|CI687528
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88766204|gb|CI775294.1|CI775294
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88333818|gb|CI643850.1|CI643850
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88421751|gb|CI621395.1|CI621395
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88360262|gb|CI611981.1|CI611981
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88358895|gb|CI619399.1|CI619399
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88763336|gb|CI772797.1|CI772797
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88394821|gb|CI622695.1|CI622695
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88589306|gb|CI707174.1|CI707174
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88348348|gb|CI639007.1|CI639007
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88445341|gb|CI587235.1|CI587235
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88403957|gb|CI601367.1|CI601367
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88378906|gb|CI681728.1|CI681728
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88391012|gb|CI592920.1|CI592920
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88345041|gb|CI625887.1|CI625887
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88349099|gb|CI678067.1|CI678067
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88761626|gb|CI771182.1|CI771182
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88316741|gb|CI624183.1|CI624183
EST:     CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: CGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
EST: gi|88370623|gb|CI590201.1|CI590201
EST:     GTCGTCTTCTTCTTCCACCTCGGGCAAGTCAAATCTCGTCGCCACTGCTG                         GTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT
genomic: GTCGTCTTCTTCTTCCACCTCGGG-AAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 73 (downstream exon)
Score: 16

CCTATAAATCGCACCCGGAAAAGATCACCATCCATTGCCCAATTCGCCGTCGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctcc ... acattcttagGTTTTGTCTCCAAAGGAAGAGACCATACAGTTCATCATGTCAGGAGGATCTGGTGATTCTTCCCCTTCATCAGGGCGGGCTAGCTTCAGTTCTTTGTCAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCTATAAATCGCACCCGGAAAAGATCACCATCCATTGCCCAATTCGCCGTCGTCGTCTTCTTCTTCCACCTCGGGAAGTCAAATCTCGTCGCCACTGCTGgttagtctccctcctcctcctcatccacactgcttagattcctctttggtggttgatcggttccgtagcagagttctgcgcgatcggtttttccattgct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcctc