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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATGGCGGGGGGCGGGGGCGCGGGGAGTAAGGTGTCGGTCGCCGCCGTGCAGTTCGCCTGCACCGACGTCGAGTCCGAGAACGTCGACACCGCGGAGAGgtatgttgtccggtatccctaaccccgtccccgtccccccgcccccccccccccccccccccccaaattgtaggggtagattgccccgaaggaaggaacc...

Basic information

species Oryza sativa
transcript LOC_Os02g33080.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g33080.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G073950_T01 (Zea mays), 5'ss of exon 1
AGATGGCGGGGGGCGGGGGCGCGGGGAGTAAGGTGTCGGTCGCCGCCGTGCAGTTCGCCTGCACCGACGTCGAGTCCGAGAACGTCGACACCGCGGAGAGgtatgttgtccggtatccctaaccccgtccccgtccccccgcccccccccccccccccccccccaaattgt-aggggtagattgccccgaaggaaggaacc
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AGAGGAGGATGGCTGCAGCCGCGGGGAGGAAGGTGGCGGTCGCCGCCGTGCAGTTCGCCTGCACCGACGTCGAGGCGGAGAACGTCGCCACCGCCGAGAGgtttgctattgcccgcccgcctgcccgcctacatccctaagttaacaccgcacctgattccctctccccccgagaagccgaactcctagccgttcagtct-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|426766|gb|D22837.1|D22837
EST:     CAGTTCGCCTGCACCGACGTCGAGTCCGAGAACGTCGACACCGCGGAGAG                         GTTGATAAGAGAAGCTCATAAGAAAGGAGCAAACATTGTCCTTGTTCAG
genomic: CAGTTCGCCTGCACCGACGTCGAGTCCGAGAACGTCGACACCGCGGAGAGgtatgttgtc ... catattgcagGTTGATAAGAGAAGCTCATAAGAAAGGAGCAAACATTGTCCTTGTTCAG
EST: gi|4969136|gb|AU066040.1|AU066040
EST:     CAGTTCGCCTGCACCGACGTCGAGTCCGAGAACGTCGACACCGCGGAGAG                         GTTGATAAGAGAAGCTCATAAGAAAGGAGCAAACATTGTCCTTGTTCAG
genomic: CAGTTCGCCTGCACCGACGTCGAGTCCGAGAACGTCGACACCGCGGAGAGgtatgttgtc ... catattgcagGTTGATAAGAGAAGCTCATAAGAAAGGAGCAAACATTGTCCTTGTTCAG
EST: gi|25800212|gb|CA756173.1|CA756173
EST:     CAGTTCGCCTGCACCGACGTCGAGTCCGAGAACGTCGACACCGCGGAGAG                         GTTGATAAGAGAAGCTCATAAGAAAGGAGCAAACATTGTCCTTGTTCAG
genomic: CAGTTCGCCTGCACCGACGTCGAGTCCGAGAACGTCGACACCGCGGAGAGgtatgttgtc ... catattgcagGTTGATAAGAGAAGCTCATAAGAAAGGAGCAAACATTGTCCTTGTTCAG
EST: gi|58602261|gb|CK012789.1|CK012789
EST:     CAGTTCGCCTGCACCGACGTCGAGTCCGAGAACGTCGACACCGCGGAGAG                         GTTGATAAGAGAAGCTCATAAGAAAGGAGCAAACATTGTCCTTGTTCAG
genomic: CAGTTCGCCTGCACCGACGTCGAGTCCGAGAACGTCGACACCGCGGAGAGgtatgttgtc ... catattgcagGTTGATAAGAGAAGCTCATAAGAAAGGAGCAAACATTGTCCTTGTTCAG
EST: gi|29671592|gb|CB667867.1|CB667867
EST:     CAGTTCGCCTGCACCGACGTCGAGTCCGAGAACGTCGACACCGCGGAGAG                         GTTGATAAGAGAAGCTCATAAGAAAGGAGCAAACATTGTCCTTGTTCAG
genomic: CAGTTCGCCTGCACCGACGTCGAGTCCGAGAACGTCGACACCGCGGAGAGgtatgttgtc ... catattgcagGTTGATAAGAGAAGCTCATAAGAAAGGAGCAAACATTGTCCTTGTTCAG
EST: gi|33795740|gb|CF323739.1|CF323739
EST:     CAGTTCGCCTGCACCGACGTCGAGTCCGAGAACGTCGACACCGCGGAGAG                         GTTGATAAGAGAAGCTCATAAGAAAGGAGCAAACATTGTCCTTGTTCAG
genomic: CAGTTCGCCTGCACCGACGTCGAGTCCGAGAACGTCGACACCGCGGAGAGgtatgttgtc ... catattgcagGTTGATAAGAGAAGCTCATAAGAAAGGAGCAAACATTGTCCTTGTTCAG
EST: gi|58679024|gb|CK067711.1|CK067711
EST:     AGAACGTCGACACCGCGGAGAG                         GTTGATAAGAGAAGCTCATAAGAAAGGAGC-AACA-TGTCCTTGTTCAG
genomic: AGAACGTCGACACCGCGGAGAGgtatgttgtc ... catattgcagGTTGATAAGAGAAGCTCATAAGAAAGGAGCAAACATTGTCCTTGTTCAG