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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCGCCCCCGACCCCAACTTCCTCGACTCCGCCGTGGCGGCGGCCGACGACCACCACCGCGACGCGCCCTCGCCCCAATCCCTCTCGCATCGCTTCTGGgttcgcactcaccgcgcgcacacaccagttcaccgaaagatgtataccgattctccaagtgaccatctcgctgtcttggcag

Basic information

species Oryza sativa
transcript LOC_Os02g32610.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29657929|gb|CB654204.1|CB654204
EST:     CCGCGACGCGCCCTC-CCCTCAATCCCTCTCGCATCGCTTCTGG                         GTGAATGGCAGCTTGTCCTACTCCGACAAGGTCCTGGATGGCTTCTACCTC
genomic: CCGCGACGCGCCCTCGCCC-CAATCCCTCTCGCATCGCTTCTGGgttcgcactc ... gtcttggcagGTGAATGGCAGCTTGTCCTACTCCGACAAGGTCCTGGATGGCTTCTACCTC
EST: gi|29660722|gb|CB656997.1|CB656997
EST:     ACCACCACCGCGACGCGCCCTCGCCCCAATCCCTCTCGCATCGCTTCTGG                         GTGAATGGCAGCTTGTCCTACTCCGACAAGGTCCTGGATGGCTTCTACCTC
genomic: ACCACCACCGCGACGCGCCCTCGCCCCAATCCCTCTCGCATCGCTTCTGGgttcgcactc ... gtcttggcagGTGAATGGCAGCTTGTCCTACTCCGACAAGGTCCTGGATGGCTTCTACCTC
EST: gi|29680442|gb|CB676717.1|CB676717
EST:     ACCACCACCGCGACGCGCCCTCGCCCCAATCCCTCTCGCATCGCTTCTGG                         GTGAATGGCAGCTTGTCCTACTCCGACAAGGTCCTGGATGGCTTCTACCTC
genomic: ACCACCACCGCGACGCGCCCTCGCCCCAATCCCTCTCGCATCGCTTCTGGgttcgcactc ... gtcttggcagGTGAATGGCAGCTTGTCCTACTCCGACAAGGTCCTGGATGGCTTCTACCTC
EST: gi|29615687|gb|CB620699.1|CB620699
EST:     CTCT-GCATCGCTTCTGG                         GTGAATGGCAGCTTGTCCTACTCCGACAAGGTCCTGGATGGCTTCCACCTC
genomic: CTCTCGCATCGCTTCTGGgttcgcactc ... gtcttggcagGTGAATGGCAGCTTGTCCTACTCCGACAAGGTCCTGGATGGCTTCTACCTC
EST: gi|29678549|gb|CB674824.1|CB674824
EST:     ACCACCACCGCGACGCGCCCTCGCCCCAATCCCTCTCGCATCGCTTCTGG                         GTGAATGGCAGCTTGTCCTACTCCGACAAGGTCCTGGATGGCTTCTACCTC
genomic: ACCACCACCGCGACGCGCCCTCGCCCCAATCCCTCTCGCATCGCTTCTGGgttcgcactc ... gtcttggcagGTGAATGGCAGCTTGTCCTACTCCGACAAGGTCCTGGATGGCTTCTACCTC