Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|88444119|gb|CI594492.1|CI594492EST: GAGGCGGAGCGAGCAATCCCCCAAG GAATTTGTATTTGTAGCGTGATTTGCAAAGCTAGTCAAGATGGTGAAGTTC
genomic: GAGGCGGAGCGAGCAATCCCCCAAGgtgatttcct ... tttggtacagGAATTTGTATTTGTAGCGTGATTTGCAAAGCTAGTCAAGATGGTGAAGTTC
EST:
gi|58588787|gb|CF987095.1|CF987095EST: -CA-T-CT-CT-CT-CTCGGATCGGGAGGCGGAGCGAGCAATCCCCCAAG GAATTTGTATTTGTAGCGTGATTTGCAAAGCTAGTCAAGATGGTGAAGTTC
genomic: CCACTCCTCCTCCTCCTCGGATCGGGAGGCGGAGCGAGCAATCCCCCAAGgtgatttcct ... tttggtacagGAATTTGTATTTGTAGCGTGATTTGCAAAGCTAGTCAAGATGGTGAAGTTC
EST:
gi|88731919|gb|CI753326.1|CI753326EST: CCACTCCTCCTCCTCCTCGGATCGGGAGGCGGAGCGAGCAATCCCCCAAG GAATTTGTATTTGTAGCGTGATTTGCAAAGCTAGTCAAGATGGTGAAGTTC
genomic: CCACTCCTCCTCCTCCTCGGATCGGGAGGCGGAGCGAGCAATCCCCCAAGgtgatttcct ... tttggtacagGAATTTGTATTTGTAGCGTGATTTGCAAAGCTAGTCAAGATGGTGAAGTTC
EST:
gi|58593699|gb|CF992007.1|CF992007EST: CACTCCTCGTGCGTCCTCGGATCGGGAGGCGGAGCGAGCAATCCCCCAAG GAATTTGTATTTGTAGCGTGATTTGCAAAGCTAGTCAAGATGGTGAAGTTC
genomic: CACTCCTCCT-CCTCCTCGGATCGGGAGGCGGAGCGAGCAATCCCCCAAGgtgatttcct ... tttggtacagGAATTTGTATTTGTAGCGTGATTTGCAAAGCTAGTCAAGATGGTGAAGTTC
EST:
gi|58672167|gb|CK060853.1|CK060853EST: CCACTCCTCCTCCTCCTCGGATCGGGAGGCGGAGCGAGCAATCCCCCAAG GAATTTGTATTTGTAGCGTGATTTGCAAAGCTAGTCAAGATGGTGAAGTTC
genomic: CCACTCCTCCTCCTCCTCGGATCGGGAGGCGGAGCGAGCAATCCCCCAAGgtgatttcct ... tttggtacagGAATTTGTATTTGTAGCGTGATTTGCAAAGCTAGTCAAGATGGTGAAGTTC
EST:
gi|88395529|gb|CI613051.1|CI613051EST: GGGAGGCGGAGCGAGCAATCCCCCAAG GAATTTGTATTTGTAGCGTGATTTGCAAAGCTAGTCAAGATGGTGAAGTTC
genomic: GGGAGGCGGAGCGAGCAATCCCCCAAGgtgatttcct ... tttggtacagGAATTTGTATTTGTAGCGTGATTTGCAAAGCTAGTCAAGATGGTGAAGTTC
EST:
gi|117217683|gb|CT845087.1|CT845087EST: GGATCGGGAGGCGGAGCGAGCAATCCCCCAAG GAATTTGTATTTGTAGCGTGATTTGCAAAGCTAGTCAAGATGGTGAAGTTC
genomic: GGATCGGGAGGCGGAGCGAGCAATCCCCCAAGgtgatttcct ... tttggtacagGAATTTGTATTTGTAGCGTGATTTGCAAAGCTAGTCAAGATGGTGAAGTTC
EST:
gi|58591626|gb|CF989934.1|CF989934EST: CACTCCTCCGTCGTCCTCGGATCGGGAGGCGGAGCGAGCAATCCCCCAAG GAATTTGTATTTGTAGCGTGATTTGCAAAGCTAGTCAAGATGGTGAAGTTC
genomic: CACTCCTCC-TCCTCCTCGGATCGGGAGGCGGAGCGAGCAATCCCCCAAGgtgatttcct ... tttggtacagGAATTTGTATTTGTAGCGTGATTTGCAAAGCTAGTCAAGATGGTGAAGTTC
EST:
gi|58608952|gb|CK036985.1|CK036985EST: CCACTCCTCCTCCTCCTCGGATCGGGAGGCGGAGCGAGCAATCCCCCAAG GAATTTGTATTTGTAGCGTGATTTGCAAAGCTAGTCAAGATGGTGAAGTTC
genomic: CCACTCCTCCTCCTCCTCGGATCGGGAGGCGGAGCGAGCAATCCCCCAAGgtgatttcct ... tttggtacagGAATTTGTATTTGTAGCGTGATTTGCAAAGCTAGTCAAGATGGTGAAGTTC
EST:
gi|88693181|gb|CI736756.1|CI736756EST: CCACTCCTCCTCCTCCTCGGATCGGGAGGCGGAGCGAGCAATCCCCCAAG GAATTTGTATTTGTAGCGTGATTTGCAAAGCTAGTCAAGATGGTGAAGTTC
genomic: CCACTCCTCCTCCTCCTCGGATCGGGAGGCGGAGCGAGCAATCCCCCAAGgtgatttcct ... tttggtacagGAATTTGTATTTGTAGCGTGATTTGCAAAGCTAGTCAAGATGGTGAAGTTC
EST:
gi|88411944|gb|CI566673.1|CI566673EST: GGCGGAGCGAGCAATCCCCCAAG GAATTTGTATTTGTAGCGTGATTTGCAAAGCTAGTCAAGATGGTGAAGTTC
genomic: GGCGGAGCGAGCAATCCCCCAAGgtgatttcct ... tttggtacagGAATTTGTATTTGTAGCGTGATTTGCAAAGCTAGTCAAGATGGTGAAGTTC
EST:
gi|4879124|gb|AU063423.1|AU063423EST: CCACTCCTCCTCCTCCTCGGATCGGGAGGCGGA-NGAGCAATCCCCCAAG GAATTTGTATTTGTAGCGTGATTTGCAAAGCTAGTCAAGATGGTGAAGTTC
genomic: CCACTCCTCCTCCTCCTCGGATCGGGAGGCGGAGCGAGCAATCCCCCAAGgtgatttcct ... tttggtacagGAATTTGTATTTGTAGCGTGATTTGCAAAGCTAGTCAAGATGGTGAAGTTC
EST:
gi|27554053|gb|CA997953.1|CA997953EST: CCACTCCTCCTCCTCCTCGGATCGGGAGGCGGAGCGAGCAATCCCCCAAG GAATTTGTATTTGTAGCGTGATTTGCAAAGCTAGTCAAGATGGTGAAGTTC
genomic: CCACTCCTCCTCCTCCTCGGATCGGGAGGCGGAGCGAGCAATCCCCCAAGgtgatttcct ... tttggtacagGAATTTGTATTTGTAGCGTGATTTGCAAAGCTAGTCAAGATGGTGAAGTTC
EST:
gi|58682939|gb|CK071626.1|CK071626EST: GGATCGGGAGGCGGAGCGAGCAATCCCCCAAG GAATTTGTATTTGTAGCGTGATTTGCAAAGCTAGTCAAGATGGTGAAGTTC
genomic: GGATCGGGAGGCGGAGCGAGCAATCCCCCAAGgtgatttcct ... tttggtacagGAATTTGTATTTGTAGCGTGATTTGCAAAGCTAGTCAAGATGGTGAAGTTC
EST:
gi|58674100|gb|CK062786.1|CK062786EST: GAGG-GGAGCGAGCAATCCCCCAAG GAATTTGTATTTGTAGCGTGATTTGCAAAGCTAGTCAAGATGGTGAAGTTC
genomic: GAGGCGGAGCGAGCAATCCCCCAAGgtgatttcct ... tttggtacagGAATTTGTATTTGTAGCGTGATTTGCAAAGCTAGTCAAGATGGTGAAGTTC
EST:
gi|5667333|gb|AU077575.1|AU077575EST: CCACTCCTCCTCCTCCTCGGATCGGGAGGCGGAGCGAGCAATCCCCCAAG GAATTTGTATTTGTAGCGTGATTTGCAAAGCTAGTCAAGATGGTGAAGTTC
genomic: CCACTCCTCCTCCTCCTCGGATCGGGAGGCGGAGCGAGCAATCCCCCAAGgtgatttcct ... tttggtacagGAATTTGTATTTGTAGCGTGATTTGCAAAGCTAGTCAAGATGGTGAAGTTC
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 1 RNA-Seqlibrary.
Block sizes:
72 (upstream exon),
75 (downstream exon)
Score:
184CCCCGCAGCGCCGCCGCCGCCACACACTCCCCCACATCTCCCCTTCCCTTCCACTCCTCCTCCTCCTCGGATCGGGAGGCGGAGCGAGCAATCCCCCAAGgtgatttcct ... tttggtacagGAATTTGTATTTGTAGCGTGATTTGCAAAGCTAGTCAAGATGGTGAAGTTCACAGTAGAAGAGCTCCGCCGGATCATGGACAAGAAGAATAACATCCGTA
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