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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTCTCGGCGCTCCGGGAGCACGACGGACGCCGCCACGGCCGCCTCCTCGCCGCCATCGACCTCCCCCTCGGCGGCAGCGGCCTCGCCACCGAGACCGGgtaagttttaccgaagctttcccttagtcgtgctgggcgcgcccgcgcgcgcgtgcgtgcgttcgtctctgatctcggtggggagcacacgggggggcgcag

Basic information

species Oryza sativa
transcript LOC_Os02g27360.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88673093|gb|CI727208.1|CI727208
EST:     GCCGCCATCGACCTCCCCCTCGGCGGCAGCGGCCTCGCCACCGAGACCGG                         GCTCTACTTCACGCGGATTGGGATCGGCACGCCGGCG
genomic: GCCGCCATCGACCTCCCCCTCGGCGGCAGCGGCCTCGCCACCGAGACCGGgtaagtttta ... gggggcgcagGCTCTACTTCACGCGGATTGGGATCGGCACGCCGGCG
EST: gi|88669996|gb|CI724112.1|CI724112
EST:     GCCGCCATCGACCTCCCCCTCGGCGGCAGCGGCCTCGCCACCGAGACCGG                         GCTCTACTTCANGCGGAT
genomic: GCCGCCATCGACCTCCCCCTCGGCGGCAGCGGCCTCGCCACCGAGACCGGgtaagtttta ... gggggcgcagGCTCTACTTCACGCGGAT
EST: gi|88672198|gb|CI726314.1|CI726314
EST:     GCCGNCATCGACCTCCCC-TCGGCGGCAGCGGCCTCGCCACCGAGACCGG                         GCTCTACTTCACGCGGATTGGGATCGGCACGCCGGNGAAGCGCTACTA
genomic: GCCGCCATCGACCTCCCCCTCGGCGGCAGCGGCCTCGCCACCGAGACCGGgtaagtttta ... gggggcgcagGCTCTACTTCACGCGGATTGGGATCGGCACGCCGGCGAAGCGCTACTA
EST: gi|88673628|gb|CI727741.1|CI727741
EST:     GCCGCCATCGACCTCCCCCTCGGCGGCAGCGGCCTCGCCACCGAGACCGG                         GCTCTACTTCACGCGGATTGGGATCGGCACGCC
genomic: GCCGCCATCGACCTCCCCCTCGGCGGCAGCGGCCTCGCCACCGAGACCGGgtaagtttta ... gggggcgcagGCTCTACTTCACGCGGATTGGGATCGGCACGCC
EST: gi|88673735|gb|CI727848.1|CI727848
EST:     GCCGCCATCGACCTCCCCCTCGGNGGCAGCGGCCTCGCCACCGAGACCGG                         GCTCTACTTCACGCGGATTGGGATCGGCACG
genomic: GCCGCCATCGACCTCCCCCTCGGCGGCAGCGGCCTCGCCACCGAGACCGGgtaagtttta ... gggggcgcagGCTCTACTTCACGCGGATTGGGATCGGCACG
EST: gi|29664886|gb|CB661161.1|CB661161
EST:     GCCGCCATCGACCTCCCCCTCGGCGGCAGCGGCCTCGCCACCGAGACCGG                         GCTCTACTTCACGCGGATTGGGATCGGCACGCCGGCGAAGCGCTACTACGT
genomic: GCCGCCATCGACCTCCCCCTCGGCGGCAGCGGCCTCGCCACCGAGACCGGgtaagtttta ... gggggcgcagGCTCTACTTCACGCGGATTGGGATCGGCACGCCGGCGAAGCGCTACTACGT
EST: gi|88671690|gb|CI725721.1|CI725721
EST:     GCCGCCATCGACCTCCCCCTCGGCGGCAGCGGCCTCGCCACCGAGACCGG                         GCTCTACTTCACGCG
genomic: GCCGCCATCGACCTCCCCCTCGGCGGCAGCGGCCTCGCCACCGAGACCGGgtaagtttta ... gggggcgcagGCTCTACTTCACGCG
EST: gi|88673629|gb|CI727742.1|CI727742
EST:     GNCGCCATCGACCTCCCCCTCGGCGGCAGCGGCCTCGCCACCGAGACCGG                         GCTCTACTTCACGCGGATTGGGATCGGCACGC
genomic: GCCGCCATCGACCTCCCCCTCGGCGGCAGCGGCCTCGCCACCGAGACCGGgtaagtttta ... gggggcgcagGCTCTACTTCACGCGGATTGGGATCGGCACGC
EST: gi|88673072|gb|CI727187.1|CI727187
EST:     GCCGCCATCGACCTCCCCCTCGGNGGCAGCGGCCTCGCCACCGAGACCGG                         GCTCTACTTCACGCGGATTGGGATCGGCACGCC
genomic: GCCGCCATCGACCTCCCCCTCGGCGGCAGCGGCCTCGCCACCGAGACCGGgtaagtttta ... gggggcgcagGCTCTACTTCACGCGGATTGGGATCGGCACGCC