1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CGCCCCCTTCCCGATTCGATTCCGCCTTGCCGGCGGCTAGGGTTTCTCGGCTCCTGCTCCTCTCCACTCCCCTACCATGGCGGACGAAGCCAACCGAGCGgtgagtgagttgccgtcttgcgcccgtgccgccggatctcgccgcggcgagcaagggagcgtgcccttgtttgagtttcctagtggtttccgtcgcgctcgcggtagtggtggtggtcttctaactcccgtttgctttgccgcgctgcgtcgtgcag
species | Oryza sativa |
transcript | LOC_Os02g26440.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTCCTGCTCCTCTCCACTCCCCTACCATGGCGGACGAAGCCAACCGAGCG GCTTTCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAGEST: gi|88421172|gb|CI567013.1|CI567013
genomic: CTCCTGCTCCTCTCCACTCCCCTACCATGGCGGACGAAGCCAACCGAGCGgtgagtgagt ... cgtcgtgcagGCTTTCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAG
EST: CTCCTGCTCCTCTCCACTCCCCTACCATGGCGGACGAAGCCAACCGAGCG GCTTTCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAGEST: gi|33816630|gb|CF334148.1|CF334148
genomic: CTCCTGCTCCTCTCCACTCCCCTACCATGGCGGACGAAGCCAACCGAGCGgtgagtgagt ... cgtcgtgcagGCTTTCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAG
EST: CTCCTGCTCCTCTCCACTCCCCTACCATGGCGGACGAAGCCAACCGAGCG GCTTTCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAGEST: gi|58667807|gb|CK056493.1|CK056493
genomic: CTCCTGCTCCTCTCCACTCCCCTACCATGGCGGACGAAGCCAACCGAGCGgtgagtgagt ... cgtcgtgcagGCTTTCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAG
EST: CTCCTGCTCCTCTCCACTCCCCTACCATGGCGGACGAAGCCAACCGAGCG GCTTTCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAGEST: gi|88692756|gb|CI736331.1|CI736331
genomic: CTCCTGCTCCTCTCCACTCCCCTACCATGGCGGACGAAGCCAACCGAGCGgtgagtgagt ... cgtcgtgcagGCTTTCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAG
EST: CTCCTGCTCCTCTCCACTCCCCTACCATGGCGGACGAAGCCAACCGAGCG GCTTTCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAGEST: gi|33677160|gb|CF305399.1|CF305399
genomic: CTCCTGCTCCTCTCCACTCCCCTACCATGGCGGACGAAGCCAACCGAGCGgtgagtgagt ... cgtcgtgcagGCTTTCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAG
EST: CTCCTGCTCCTCTCCACTCCCCTACCATGGCGGACGAAGCCAACCGAGCG GCTTTCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAGEST: gi|55442130|gb|CV734386.1|CV734386
genomic: CTCCTGCTCCTCTCCACTCCCCTACCATGGCGGACGAAGCCAACCGAGCGgtgagtgagt ... cgtcgtgcagGCTTTCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAG
EST: CTCCTGCTCCTCTCCACTCCCCTACCATGGCGGACGAAGCCAACCGAGCG GCTTTCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAGEST: gi|88742276|gb|CI765784.1|CI765784
genomic: CTCCTGCTCCTCTCCACTCCCCTACCATGGCGGACGAAGCCAACCGAGCGgtgagtgagt ... cgtcgtgcagGCTTTCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAG
EST: CTCCTGCTCCTCTCCACTCCCCTACCATGGCGGACGAAGCCAACCGAGCG GCTTTCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAGEST: gi|86824043|gb|CI260706.1|CI260706
genomic: CTCCTGCTCCTCTCCACTCCCCTACCATGGCGGACGAAGCCAACCGAGCGgtgagtgagt ... cgtcgtgcagGCTTTCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAG
EST: CTGCTCCTCTCCACTCCCCTACCATGGCGGACGAAGCCAACCGAGCG GCTTTCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAG
genomic: CTGCTCCTCTCCACTCCCCTACCATGGCGGACGAAGCCAACCGAGCGgtgagtgagt ... cgtcgtgcagGCTTTCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCCCCCTTCCCGATTCGATTCCGCCTTGCCGGCGGCTAGGGTTTCTCGGCTCCTGCTCCTCTCCACTCCCCTACCATGGCGGACGAAGCCAACCGAGCGgtgagtgagttgccgtcttgcgcccgtgccgccggatctcgccgcggcgagcaagggagcgtgcccttgtttgagtttcctagtggtttccgtcgcgctcgcggtagtggtggtggtcttctaactcccgtttgctttgccgcgctgcgtcgtgcag
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