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CGGCTTCGTCCCCGCCGCCGTACTGCGCCGCCGCCGGTGCCGACCTGCTGCTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCGgtacgatttctcaagcttttgtttggggggggggggggggtggggcggttcgatttgctgtgtgcgcgtaggtagaggctgcgacgacgcggtcaatttc...
species | Oryza sativa |
transcript | LOC_Os02g19510.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCG CTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGGEST: gi|29646523|gb|CB651530.1|CB651530
genomic: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCGgtacgatttc ... gaatcgacagCTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGG
EST: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCG CTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGGEST: gi|58608259|gb|CK036292.1|CK036292
genomic: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCGgtacgatttc ... gaatcgacagCTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGG
EST: CTGCGGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCG CTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGGEST: gi|58669315|gb|CK058001.1|CK058001
genomic: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCGgtacgatttc ... gaatcgacagCTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGG
EST: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCG CTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGGEST: gi|88717707|gb|CI741217.1|CI741217
genomic: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCGgtacgatttc ... gaatcgacagCTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGG
EST: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCG CTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGGEST: gi|29673248|gb|CB669523.1|CB669523
genomic: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCGgtacgatttc ... gaatcgacagCTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGG
EST: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCG CTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGGEST: gi|58659150|gb|CK047830.1|CK047830
genomic: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCGgtacgatttc ... gaatcgacagCTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGG
EST: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCG CTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGGEST: gi|29641723|gb|CB646730.1|CB646730
genomic: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCGgtacgatttc ... gaatcgacagCTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGG
EST: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCG CTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGGEST: gi|29624841|gb|CB629852.1|CB629852
genomic: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCGgtacgatttc ... gaatcgacagCTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGG
EST: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCG CTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGGEST: gi|88360099|gb|CI610213.1|CI610213
genomic: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCGgtacgatttc ... gaatcgacagCTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGG
EST: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCG CTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGGEST: gi|11610396|gb|AU166072.1|AU166072
genomic: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCGgtacgatttc ... gaatcgacagCTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGG
EST: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCG CTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGGEST: gi|29676038|gb|CB672313.1|CB672313
genomic: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCGgtacgatttc ... gaatcgacagCTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGG
EST: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCG CTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGGEST: gi|88315187|gb|CI611851.1|CI611851
genomic: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCGgtacgatttc ... gaatcgacagCTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGG
EST: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCG CTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGGEST: gi|88728131|gb|CI751641.1|CI751641
genomic: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCGgtacgatttc ... gaatcgacagCTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGG
EST: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCG CTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGGEST: gi|29673598|gb|CB669873.1|CB669873
genomic: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCGgtacgatttc ... gaatcgacagCTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGG
EST: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCG CTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGGEST: gi|58685697|gb|CK074384.1|CK074384
genomic: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCGgtacgatttc ... gaatcgacagCTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGG
EST: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCG CTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGGEST: gi|29640936|gb|CB645943.1|CB645943
genomic: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCGgtacgatttc ... gaatcgacagCTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGG
EST: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCG CTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGGEST: gi|58670226|gb|CK058912.1|CK058912
genomic: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCGgtacgatttc ... gaatcgacagCTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGG
EST: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTT-C--CG -T-C-GCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGGEST: gi|58672680|gb|CK061366.1|CK061366
genomic: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCGgtacgatttc ... gaatcgacagCTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGG
EST: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCG CTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGACAGAGGEST: gi|29616238|gb|CB621250.1|CB621250
genomic: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCGgtacgatttc ... gaatcgacagCTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGG
EST: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCG CTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGGEST: gi|88356602|gb|CI626217.1|CI626217
genomic: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCGgtacgatttc ... gaatcgacagCTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGG
EST: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCG CTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGGEST: gi|88696183|gb|CI739758.1|CI739758
genomic: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCGgtacgatttc ... gaatcgacagCTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGG
EST: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCG CTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGGEST: gi|58691339|gb|CK080026.1|CK080026
genomic: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCGgtacgatttc ... gaatcgacagCTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGG
EST: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCG CTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGGEST: gi|58666569|gb|CK055255.1|CK055255
genomic: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCGgtacgatttc ... gaatcgacagCTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGG
EST: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCG CTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGGEST: gi|58690262|gb|CK078949.1|CK078949
genomic: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCGgtacgatttc ... gaatcgacagCTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGG
EST: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCG CTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGGEST: gi|88405374|gb|CI586195.1|CI586195
genomic: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCGgtacgatttc ... gaatcgacagCTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGG
EST: TGCTGCGGGGGAGATCTGTCCGGGGTGTGCGGCTGATTCGC-TTCCGTCG CTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGGEST: gi|66913022|gb|CX099870.1|CX099870
genomic: TGCTGCGGGGGAGATCTGTCC-GGGTGTGCGGCTGATTCGCTTTCCGTCGgtacgatttc ... gaatcgacagCTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGG
EST: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCG CTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGGEST: gi|58687148|gb|CK075835.1|CK075835
genomic: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCGgtacgatttc ... gaatcgacagCTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGG
EST: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCG CTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGGEST: gi|58680355|gb|CK069042.1|CK069042
genomic: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCGgtacgatttc ... gaatcgacagCTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGG
EST: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCG CTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGGEST: gi|58601351|gb|CK011879.1|CK011879
genomic: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCGgtacgatttc ... gaatcgacagCTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGG
EST: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCG CTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGGEST: gi|88445013|gb|CI589491.1|CI589491
genomic: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCGgtacgatttc ... gaatcgacagCTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGG
EST: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCG CTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGGEST: gi|58605686|gb|CK033719.1|CK033719
genomic: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCGgtacgatttc ... gaatcgacagCTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGG
EST: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCG CTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGG
genomic: CTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCGgtacgatttc ... gaatcgacagCTGCAGCTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGCTTCGTCCCCGCCGCCGTACTGCGCCGCCGCCGGTGCCGACCTGCTGCTGCTGCGGGGGAGATCTGTCCGGGTGTGCGGCTGATTCGCTTTCCGTCGgtacgatttctcaagcttttgtttggggggggggggggggtggggcggttcgatttgctgtgtgcgcgtaggtagaggctgcgacgacgcggtcaatttc
- - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggggcgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggctgcg