Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTCCCAAACCCTAACCCCGGAGGAGAGGGAGGAGCAGCCATGGCCGTGGGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgcttgcgcgcgggcggtgtgggcgccacacctctcgtcctctctgagctgcttgttcttgcttggggtttttgggggattctgatttgggacttcttctctttttctctctccgtgtgggtgcag

Basic information

species Oryza sativa
transcript LOC_Os02g18550.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g18550.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA10G39050.1 (Glycine max), 5'ss of exon 1
-CACTCCCAAACCCTAACCCCGGAGGAGAGGGAGGAGCAGCCATGGCCGTGGGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgcttgcgcgcgggcggtgtgggcgccacacctctcgtcctctctgagctgcttgt--tcttgcttggggtttttgggggattctgatttgggacttcttctctttttctctctccgtgtgggtgcag
 ||  | ||    ||       |    |      | | |||||||||||| || ||||||||| | ||||||||||| | ||||||  ||||||||||| ||| ||   ||| |                     |   || | |  ||||||   |  ||||  | ||||||     ||       | |   ||    ||| | ||   ||| | | |    |||  |      
TCATCCGCAGCTGCTTTTATTCGCACCGCAAACAGTG-AGCCATGGCCGTCGGAAAGAACAAGCGCATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAGGCgttagtatcttccattt-----------------cttttccccttttctctgttttatttgtgtttttgctttaacattc----aaaattcaat----gacgtgtttggtttgtgtgtgaatgtgcag------

upper sequence: LOC_Os02g18550.1 (Oryza sativa), 5'ss of exon 1
lower sequence: PP1S17_306V6.1 (Physcomitrella patens), 5'ss of exon 1
CACTCCCAAACCCTAACCCCGGAGGAGAGGGAGGAGCAGCCATGGCCGTGGGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgcttgcgcgcgggcggtgtgggcgccacacctctcgtcctctctgagctgcttgttcttgcttggggtttttgggggattctgatttgggacttcttctctttttctctctccgtgtgg-gtgcag
| || |  | |   |   |    |           ||||||||||| || || ||||||||| ||||||||||||| | ||||||  |||||||||| | ||||       |  ||| ||| || || || |   ||  |  |||   | ||   |  |  || |||    | ||| ||| ||| ||||| |     ||||     |          |  | |||| ||||||
CCCTGCTCATCATCATATCTCTTGCTACTCTGTCTGCAGCCATGGCTGTCGGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAATgtaa------cgtccgctggctgtctgagctctttacgaca-gtcgaatgtgtaat-ttcatttttgt---gagttattgagggtttctgct----aacttgacgacg---------tgggagtggtgtgcag

upper sequence: LOC_Os02g18550.1 (Oryza sativa), 5'ss of exon 1
lower sequence: PP1S46_147V6.1 (Physcomitrella patens), 5'ss of exon 1
-CACTCCCAAACCCTAACCCCGGAGGAGAGGGAGGAGCAGCCATGGCCGTGGGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct----tgcgcgcgggcggtgtgggcgccacacctctcgtcctctctgagctgcttgttcttgcttgg-ggtttttggg---ggattctgatttgggacttcttctctttttctctctc-cgtgtgggtgcag-------------------------------
 |     |     ||    | |||          | ||||||||||||||||| ||||||||| | || |||||||| | ||||||  |||||||||| | |||  || |     |    |||  | || |  | | |      || |   | | |   | ||  | ||| | |  | ||  ||| ||   |||   |  | || | | |  |    | | || |  | |   || || | |                               
GCTTCTGCTGCTGCTGTTGCTGGAATTCCTCTTTG-GCAGCCATGGCCGTGGGGAAGAACAAGCGCATTTCCAAGGGGAAGAAGGGAGGCAAGAAGAAAATgtactctcccacactctctgcgctctgtattcgtgtcttcatgcttgcattgtgtctcccgcgagctctcgttccgtggcctttaggtgtggagctttttatgtgccctggtggaatgtgctgtggctcacatgagttctgattagagtggcggtggttttttgcattgtag

upper sequence: LOC_Os02g18550.1 (Oryza sativa), 5'ss of exon 1
lower sequence: PP1S219_50V6.1 (Physcomitrella patens), 5'ss of exon 1
CACTCCCAAACCCTAACCCCGGAGGAGAGGGAGGAGCAGCCATGGCCGTGGGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgctt--gcgcgcgggcggtgtgggcgccacacctctcgtcctctctgagctgcttgt-tcttgcttggggtttttgggggattctgatttgggacttcttctctttttctc-tctccgtgtgggtgcag------------------------------
  |  |     |  | |      |  |       ||||||||||||||| |||||||||||| | || |||||||| | ||||||  |||||||||| | |||      |   |  |        ||||    |    |  | |  | |||   |  || |||| |  |   ||   |   ||  || ||    | | ||  ||  | |  || | |  | |  | |  ||| |                                
TTCAGCTCGCACGGAGCTTGTTTGCTGCTTCGACAGCAGCCATGGCCGTCGGCAAGAACAAGCGTATTTCCAAGGGGAAGAAGGGAGGCAAGAAGAAAATgtacttctttccagtacttttctactgtgaattcacggctccactgcgtctgccaagtgtttgtgtactagctgtcttgagtgatggtttggtttctagggtttagtgtgcttgtgtggtatatgcggaggttctaactagagcgacgatgatttttgcactgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33687809|gb|CF316048.1|CF316048
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|58602440|gb|CK012968.1|CK012968
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88308219|gb|CI649434.1|CI649434
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88688453|gb|CI732029.1|CI732029
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGA---C                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88587179|gb|CI704908.1|CI704908
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88363507|gb|CI618068.1|CI618068
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|33802917|gb|CF327329.1|CF327329
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88673143|gb|CI727257.1|CI727257
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|4878474|gb|AU062773.1|AU062773
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88342105|gb|CI644442.1|CI644442
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88334936|gb|CI648711.1|CI648711
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|218504336|gb|FG960758.1|FG960758
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGGGAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88328472|gb|CI676680.1|CI676680
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|4878343|gb|AU062642.1|AU062642
EST:     GGNAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88338339|gb|CI655528.1|CI655528
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88670797|gb|CI724913.1|CI724913
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|218486263|gb|FG964022.1|FG964022
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|58678754|gb|CK067441.1|CK067441
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|33807193|gb|CF329477.1|CF329477
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88584886|gb|CI702472.1|CI702472
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88691110|gb|CI735189.1|CI735189
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGC---AAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88327831|gb|CI657875.1|CI657875
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|33690861|gb|CF319100.1|CF319100
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|33796645|gb|CF324190.1|CF324190
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88728960|gb|CI752470.1|CI752470
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88694134|gb|CI738172.1|CI738172
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|87006357|gb|CI293148.1|CI293148
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88675660|gb|CI729773.1|CI729773
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88669835|gb|CI723951.1|CI723951
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|218485395|gb|FG947740.1|FG947740
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|428717|gb|D24869.1|D24869
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88326139|gb|CI651194.1|CI651194
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|86887523|gb|CI294157.1|CI294157
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88670179|gb|CI724295.1|CI724295
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88691670|gb|CI733748.1|CI733748
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGA---C                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88690991|gb|CI735070.1|CI735070
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGC---AAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|33655245|gb|CF277859.1|CF277859
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGGC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88728974|gb|CI752484.1|CI752484
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|55439670|gb|CV733145.1|CV733145
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88400951|gb|CI684925.1|CI684925
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88329520|gb|CI648582.1|CI648582
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88666583|gb|CI718719.1|CI718719
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88308477|gb|CI650886.1|CI650886
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88576445|gb|CI670590.1|CI670590
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88290442|gb|CI665231.1|CI665231
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88380862|gb|CI634887.1|CI634887
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|89172597|gb|CI721656.1|CI721656
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88694873|gb|CI738911.1|CI738911
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88309215|gb|CI655223.1|CI655223
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|55437149|gb|CV731773.1|CV731773
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|58597856|gb|CK008384.1|CK008384
EST:     GGCGAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88581637|gb|CI698837.1|CI698837
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88675786|gb|CI729358.1|CI729358
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGNAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|117246664|gb|CT863247.1|CT863247
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88720549|gb|CI743848.1|CI743848
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|3763663|gb|AU030415.1|AU030415
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88586796|gb|CI704514.1|CI704514
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88569521|gb|CI660696.1|CI660696
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|58677313|gb|CK066000.1|CK066000
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|58692409|gb|CK081096.1|CK081096
EST:     GGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|33804300|gb|CF328024.1|CF328024
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88336441|gb|CI643254.1|CI643254
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88335289|gb|CI650254.1|CI650254
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|1438560|gb|U60310.1|U60310
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|58599545|gb|CK010073.1|CK010073
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|568312|gb|D39155.1|D39155
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|38477786|gb|CF961919.1|CF961919
EST:     GGCAAGAACAAGAGGATCTCCAGGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|33692843|gb|CF321082.1|CF321082
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88688847|gb|CI732423.1|CI732423
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGC---AAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88575829|gb|CI669974.1|CI669974
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88735488|gb|CI758996.1|CI758996
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88302381|gb|CI668227.1|CI668227
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88670183|gb|CI724299.1|CI724299
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88339781|gb|CI649038.1|CI649038
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|33687682|gb|CF315921.1|CF315921
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
EST: gi|88379044|gb|CI681875.1|CI681875
EST:     GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGAC                         CGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT
genomic: GGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 230

CACTCCCAAACCCTAACCCCGGAGGAGAGGGAGGAGCAGCCATGGCCGTGGGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgct ... gtgggtgcagCGTCGATCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGTGTTCTCCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGG




<











<


<









Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CACTCCCAAACCCTAACCCCGGAGGAGAGGGAGGAGCAGCCATGGCCGTGGGCAAGAACAAGAGGATCTCCAAGGGCAGGAAGGGCAGCAAGAAGAAGACgtaagctgcttgcgcgcgggcggtgtgggcgccacacctctcgtcctctctgagctgcttgttcttgcttggggtttttgggggattctgatttgggacttcttctctttttctctctccgtgtgggtgcag

- - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG