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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGGAGGCGGACATCTCGCGCCGCCGCGCCGCCGTCGGCATGGCCGTCTCCGCCCTTCTCCCGCCTATTGCGGCTGCGCCGCCTCTCGCCGGAAGCACACgtacgtgagtctcctcctcccactgcatcctctcgctcgttcgaactgtctaagctgcgtggtgcactgcgtcacagcgtgtggcgccgaatgcagccgc...

Basic information

species Oryza sativa
transcript LOC_Os02g15970.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30227684|gb|CB965576.1|CB965576
EST:     CGCCCTTCTCCCGCCTATTGCGGCTGCGCCGCCTCTCGCCGGAAGCACAC                         TTTCCTTCGGTGTTCCCTACCAGAACAAGAGAAGGATCCTAACGATGCGAA
genomic: CGCCCTTCTCCCGCCTATTGCGGCTGCGCCGCCTCTCGCCGGAAGCACACgtacgtgagt ... tcatttatagTTTCCTTCGGTGTTCCCTACCAGAACAAGAGAAGGATCCTAACGATGCGAG
EST: gi|426017|gb|D22705.1|D22705
EST:     CGCCCTTCTCCCGCCTATNGCGGCTGCGCCGCTTCTCGCCGGAAGCACAC                         TTTCCTTCGGTGTTCCCTACCAGAACAAGAGAAGGATCCTAACGATGCGAG
genomic: CGCCCTTCTCCCGCCTATTGCGGCTGCGCCGCCTCTCGCCGGAAGCACACgtacgtgagt ... tcatttatagTTTCCTTCGGTGTTCCCTACCAGAACAAGAGAAGGATCCTAACGATGCGAG
EST: gi|33687072|gb|CF315311.1|CF315311
EST:     CGCCCTTCTCCCGCCTATTGCGGCTGCGCCGCCTCTCGCCGGAAGCACAC                         TTTCCTTCGGTGTTCCCTACCAGAACAAGAGAAGGATCCTAACGATGCGAG
genomic: CGCCCTTCTCCCGCCTATTGCGGCTGCGCCGCCTCTCGCCGGAAGCACACgtacgtgagt ... tcatttatagTTTCCTTCGGTGTTCCCTACCAGAACAAGAGAAGGATCCTAACGATGCGAG
EST: gi|30227453|gb|CB965345.1|CB965345
EST:     CGCCCTTCTCCCGCCTATTGCGGCTGCGCCGCCTCTCGCCGGAAGCACAC                         TTTCCTTCGGTGTTCCCTACCAGAACAAGAGAAGGATCCTAACGATGCGAA
genomic: CGCCCTTCTCCCGCCTATTGCGGCTGCGCCGCCTCTCGCCGGAAGCACACgtacgtgagt ... tcatttatagTTTCCTTCGGTGTTCCCTACCAGAACAAGAGAAGGATCCTAACGATGCGAG