1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CCTTCACGTGCTCCCTCTCCTCTGCGAGTCGGCGGCGCCGATCTCCATTTGTCGAGGCGAGCAGAGCAGGGGAGCCGGGAGGGGAGGGCATCCTGGTGAGgtgagcatccacatcccctttctgatgaatcattcatctctctcccacctggagtagttttttttttgtctggaattcgctcgcgttcgttaaccctagctttctcttgtag
species | Oryza sativa |
transcript | LOC_Os02g15870.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTCGAGGCGAGCAGAGCAGGGGAGCCGGGAGGGGAGGGCATCCTGGTGAG ATCTGGAAGAAGCTCTCCTCTTAATTAACCTGTGTAAAAGTTTGTTTGTTCEST: gi|29675363|gb|CB671638.1|CB671638
genomic: GTCGAGGCGAGCAGAGCAGGGGAGCCGGGAGGGGAGGGCATCCTGGTGAGgtgagcatcc ... tctcttgtagATCTGGAAGAAGCTCTCCTCTTAATTAACCTGTGTAAAAGTTTGTTTGTTC
EST: GTCGAGGCGAGCAGAGCAGGGGAGCCGGGAGGGGAGGGCATCCTGGTGAG ATCTGGAAGAAGCTCTCCTCTTAATTAACCTGTGTAAAAGTTTGTTTGTTCEST: gi|88424077|gb|CI689779.1|CI689779
genomic: GTCGAGGCGAGCAGAGCAGGGGAGCCGGGAGGGGAGGGCATCCTGGTGAGgtgagcatcc ... tctcttgtagATCTGGAAGAAGCTCTCCTCTTAATTAACCTGTGTAAAAGTTTGTTTGTTC
EST: GAGGGGAGGGCATCCTGGTGAG ATCTGGAAGAAGCTCTCCTCTTAATTAACCTGTGTAAAAGTTTGTTTGTTCEST: gi|29631823|gb|CB636832.1|CB636832
genomic: GAGGGGAGGGCATCCTGGTGAGgtgagcatcc ... tctcttgtagATCTGGAAGAAGCTCTCCTCTTAATTAACCTGTGTAAAAGTTTGTTTGTTC
EST: GTCGAGGCGAGCAGAGCAGGGGAGCCGGGAGGGGAGGGCATCCTGGTGAG ATCTGGAAGAAGCTCTCCTCTTAATTAACCTGTGTAAAAGTTTGTTTGTTCEST: gi|88736013|gb|CI759521.1|CI759521
genomic: GTCGAGGCGAGCAGAGCAGGGGAGCCGGGAGGGGAGGGCATCCTGGTGAGgtgagcatcc ... tctcttgtagATCTGGAAGAAGCTCTCCTCTTAATTAACCTGTGTAAAAGTTTGTTTGTTC
EST: GTCGAGGCGAGCAGAGCAGGGGAGCCGGGAGGGGAGGGCATCCTGGTGAG ATCTGGAAGAAGCTCTCCTCTTAATTAACCTGTGTAAAAGTTTGTTTGTTCEST: gi|88765983|gb|CI775073.1|CI775073
genomic: GTCGAGGCGAGCAGAGCAGGGGAGCCGGGAGGGGAGGGCATCCTGGTGAGgtgagcatcc ... tctcttgtagATCTGGAAGAAGCTCTCCTCTTAATTAACCTGTGTAAAAGTTTGTTTGTTC
EST: GTCGAGGCGAGCAGAGCAGGGGAGCCGGGAGGGGAGGGCATCCTGGTGAG ATCTGGAAGAAGCTCTCCTCTTAATTAACCTGTGTAAAAGTTTGTTTGTTCEST: gi|88734603|gb|CI758111.1|CI758111
genomic: GTCGAGGCGAGCAGAGCAGGGGAGCCGGGAGGGGAGGGCATCCTGGTGAGgtgagcatcc ... tctcttgtagATCTGGAAGAAGCTCTCCTCTTAATTAACCTGTGTAAAAGTTTGTTTGTTC
EST: GTCGAGGCGAGCAGAGCAGGGGAGCCGGGAGGGGAGGGCATCCTGGTGAG ATCTGGAAGAAGCTCTCCTCTTAATTAACCTGTGTAAAAGTTTGTTTGTTCEST: gi|88403375|gb|CI573098.1|CI573098
genomic: GTCGAGGCGAGCAGAGCAGGGGAGCCGGGAGGGGAGGGCATCCTGGTGAGgtgagcatcc ... tctcttgtagATCTGGAAGAAGCTCTCCTCTTAATTAACCTGTGTAAAAGTTTGTTTGTTC
EST: GTCGAGGCGAGCAGAGCAGGGGAGCCGGGAGGGGAGGGCATCCTGGTGAG ATCTGGAAGAAGCTCTCCTCTTAATTAACCTGTGTAAAAGTTTGTTTGTTCEST: gi|88740170|gb|CI763678.1|CI763678
genomic: GTCGAGGCGAGCAGAGCAGGGGAGCCGGGAGGGGAGGGCATCCTGGTGAGgtgagcatcc ... tctcttgtagATCTGGAAGAAGCTCTCCTCTTAATTAACCTGTGTAAAAGTTTGTTTGTTC
EST: GTCGAGGCGAGCAGAGCAGGGGAGCCGGGAGGGGAGGGCATCCTGGTGAG ATCTGGAAGAAGCTCTCCTCTTAATTAACCTGTGTAAAAGTTTGTTTGTTCEST: gi|88762354|gb|CI771910.1|CI771910
genomic: GTCGAGGCGAGCAGAGCAGGGGAGCCGGGAGGGGAGGGCATCCTGGTGAGgtgagcatcc ... tctcttgtagATCTGGAAGAAGCTCTCCTCTTAATTAACCTGTGTAAAAGTTTGTTTGTTC
EST: GTCGAGGCGAGCAGAGCAGGGGAGCCGGGAGGGGAGGGCATCCTGGTGAG ATCTGGAANAAGCTCTCCTCTTAATTAACCTGTGTAAAAGTTTGTTTGTTCEST: gi|33654216|gb|CF276830.1|CF276830
genomic: GTCGAGGCGAGCAGAGCAGGGGAGCCGGGAGGGGAGGGCATCCTGGTGAGgtgagcatcc ... tctcttgtagATCTGGAAGAAGCTCTCCTCTTAATTAACCTGTGTAAAAGTTTGTTTGTTC
EST: GTCGAGGCGAGCAGAGCAGGGGAGCCGGGAGGGGAGGGCATCCTGGTGAG ATCTGGAAGAAGCTCTCCTCTTAATTAACCTGTGTAAAAGTTTGTTTGTTCEST: gi|29631793|gb|CB636802.1|CB636802
genomic: GTCGAGGCGAGCAGAGCAGGGGAGCCGGGAGGGGAGGGCATCCTGGTGAGgtgagcatcc ... tctcttgtagATCTGGAAGAAGCTCTCCTCTTAATTAACCTGTGTAAAAGTTTGTTTGTTC
EST: GTCGAGGCGAGCAGAGCAGGGGAGCCGGGAGGGGAGGGCATCCTGGTGAG ATCTGGAAGAAGCTCTCCTCTTAATTAACCTGTGTAAAAGTTTGTTTGTTCEST: gi|88732838|gb|CI756015.1|CI756015
genomic: GTCGAGGCGAGCAGAGCAGGGGAGCCGGGAGGGGAGGGCATCCTGGTGAGgtgagcatcc ... tctcttgtagATCTGGAAGAAGCTCTCCTCTTAATTAACCTGTGTAAAAGTTTGTTTGTTC
EST: GTCGAGGCGAGCAGAGCAGGGGAGCCGGGAGGGGAGGGCATCCTGGTGAG ATCTGGAAGAAGCTCTCCTCTTAATTAACCTGTGTAAAAGTTTGTTTGTTC
genomic: GTCGAGGCGAGCAGAGCAGGGGAGCCGGGAGGGGAGGGCATCCTGGTGAGgtgagcatcc ... tctcttgtagATCTGGAAGAAGCTCTCCTCTTAATTAACCTGTGTAAAAGTTTGTTTGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTTCACGTGCTCCCTCTCCTCTGCGAGTCGGCGGCGCCGATCTCCATTTGTCGAGGCGAGCAGAGCAGGGGAGCCGGGAGGGGAGGGCATCCTGGTGAGgtgagcatccacatcccctttctgatgaatcattcatctctctcccacctggagtagttttttttttgtctggaattcgctcgcgttcgttaaccctagctttctcttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG