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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGCGCCGGAGCCGGGCAGCTGCAGGTGGGCGGCGGCGGCGGGAGGGACTCCAGCAGCGACGGATCCAGCAACGGCGGCGGGCAGCCGCAGAATCGCCGGgtcggtgagctgaacgagattgttgttttggtcgcctctgcagctacgcggattgatttgaccggatatggtttgaccttttttgcattgagttcgtgat...

Basic information

species Oryza sativa
transcript LOC_Os02g14760.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g14760.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G029058_T01 (Zea mays), 5'ss of exon 1
CGGCGCCGGAGCCGGGCAGCTGCAGGTGGGCGGCGGCGGCGGGAGGGACTCCAGCAGCGACGGATCCAGCAACGGCGGCGG-----GCAGCCGCA-------GAATCGCCGGgtcggtgagctgaacgagattgttgttttggtcgcctctgcagctacgcggattgatttgaccggatatggt-ttgacct--tttttgcattgagttcgtgat
||||| |  || |            || |  |||||||| || ||||||||||||||||||||||||||||||||||||||     |||| |||        ||||||||||||| ||||||||    |  ||   || ||   || ||||      || ||  | ||||||   || | |||| ||   ||    ||| | |       |||||
CGGCGGCAAAGTC------------GTCGTTGGCGGCGGGGGCAGGGACTCCAGCAGCGACGGATCCAGCAACGGCGGCGGCGGCGGCAGTCGCCACCAACCGAATCGCCGGgtctgtgagctg--ttaattttgcgtcttttacggctctatc-taacacgtctcgatttgggaggttttggtatttgtctgacctttccctccttcctgtgat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58681741|gb|CK070428.1|CK070428
EST:     CCAGCAGCGACGGATCCAGCAACGGCGGCGGGCAGCCGCAGAATCGCCGG                         AGAAGGAGTGGATTCAACCAGGGTAAGGAGGAGGACGGGAGGCCGGACACG
genomic: CCAGCAGCGACGGATCCAGCAACGGCGGCGGGCAGCCGCAGAATCGCCGGgtcggtgagc ... gttgtaacagAGAAGGAGTGGATTCAACCAGGG-AAGGAGGAGGACGGGAGGCCGGACACG
EST: gi|8857781|gb|AU095099.1|AU095099
EST:     CCAGCAGCGACGGATCCAGCAACGGCGGCGGGCAG-C-NAGAATCGCCGG                         AGAAGGAGTGGATTCAACCAGGGAAGGAGGAGGACGGGAGGCCGGACACGA
genomic: CCAGCAGCGACGGATCCAGCAACGGCGGCGGGCAGCCGCAGAATCGCCGGgtcggtgagc ... gttgtaacagAGAAGGAGTGGATTCAACCAGGGAAGGAGGAGGACGGGAGGCCGGACACGA