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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCATCGACCAGATCAAGCGCAACGTCGAGCTCCTCTGCCCCGGCGTCGTCTCCTGCGCCGACATCGTCGCCCTCGCCGCCCGCGACAGCACCGCCCTGgtacgcgccgcccaccgacacacacaatgttcgaattgattccatagattctgacggcgacgcgcgtacgtgcag

Basic information

species Oryza sativa
transcript LOC_Os02g14430.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g14430.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G117706_T01 (Zea mays), 5'ss of exon 2
CGTCATCGACCAGATCAAGCGCAACGTCGAGCTCCTCTGCCCCGGCGTCGTCTCCTGCGCCGACATCGTCGCCCTCGCCGCCCGCGACAGCACCGCCCTGgtacgcgccgcc--caccgacacacaca-atgttcgaattgattccatagattctgacggcgacgcgcgtacgtgcag--------
||| |||||||||||||||  ||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||| || ||| |||||  | ||||| |  |   |   ||  ||  ||  | ||    |||  || |||||   | || || ||  | |   | ||             
CGTGATCGACCAGATCAAGGCCAACGTCGAGCTCATCTGCCCCGGCGTTGTCTCCTGCGCCGACATTGTCGCCCTCGCCGCGCGAGACGGCACCTTCTTGgtaagtacatacgttacgtacgtacgtagatagatgaaccgactccatcactacttactgctgctccgatccgcatcatcggtcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29643794|gb|CB648801.1|CB648801
EST:     TCTCCTGCGCCGACATCGTCGCCCTCGCCGCCCGCGACAGCACCGCCCTG                         CTCGGCGGGCCAAGCTGGGCGGTGCCGCTGGGGCGGCGGGACTCGACGACG
genomic: TCTCCTGCGCCGACATCGTCGCCCTCGCCGCCCGCGACAGCACCGCCCTGgtacgcgccg ... gtacgtgcagCTCGGCGGGCCAAGCTGGGCGGTGCCGCTGGGGCGGCGGGACTCGACGACG
EST: gi|29643482|gb|CB648489.1|CB648489
EST:     TCTCCTGCGCCGACATCGTCGCCCTCGCCGCCCGCGACAGCACCGCCCTG                         CTCGGCGGGCCAAGCTGGGCGGTGCCGCTGGGGCGGCGGGACTCGACGACG
genomic: TCTCCTGCGCCGACATCGTCGCCCTCGCCGCCCGCGACAGCACCGCCCTGgtacgcgccg ... gtacgtgcagCTCGGCGGGCCAAGCTGGGCGGTGCCGCTGGGGCGGCGGGACTCGACGACG
EST: gi|29669791|gb|CB666066.1|CB666066
EST:     TCTCCTGCGCCGACATCGTCGCCCTCGCCGCCCGCGACAGCACCGCCCTG                         CTCGGCGGGCCAAGCTGGGCGGTGCCGCTGGGGCGGCGGGACTCGACGACG
genomic: TCTCCTGCGCCGACATCGTCGCCCTCGCCGCCCGCGACAGCACCGCCCTGgtacgcgccg ... gtacgtgcagCTCGGCGGGCCAAGCTGGGCGGTGCCGCTGGGGCGGCGGGACTCGACGACG