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CGAGGTGAGGGCTCGTAGCACCGTCCGGGAGGGCGGAGGAGGAGGAGAGATGAGCTGCTGCGCCGCCTCGTCTTCCTCTCCGGTTCTCGCCAACCCCCGGgtgagtacgcacgccctaccccgtcttcgccttgccggcccgccgccgccgtcctctccatcgacggcggcgtgaaattcctgcaggaatccgatgcgtt...
species | Oryza sativa |
transcript | LOC_Os02g13970.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGAGCTGCTGCGCCGCCTCGTCTTCCTCTCCGGTTCTCGCCAACCCCCNN NNNNNATTCGCTGCTAGCTGCTCAACAAGAAGGAACCACAGGGTGATCTTCEST: gi|29626259|gb|CB631270.1|CB631270
genomic: TGAGCTGCTGCGCCGCCTCGTCTTCCTCTCCGGTTCTCGCCAACCCCCGGgtgagtacgc ... aaactttcagGGGGGATTCGCTGCTAGCTGCTCAACAAGAAGGAACCACAGGGTGATCTTC
EST: GCCGCCTCGTCTTCCTCTCCGGTTCTCGCCAACCCCCNN NNNNNATTCGCTGCTAGCTGCTCAACAAGAAGGAACCACAGGGTGATCTTCEST: gi|29623795|gb|CB628806.1|CB628806
genomic: GCCGCCTCGTCTTCCTCTCCGGTTCTCGCCAACCCCCGGgtgagtacgc ... aaactttcagGGGGGATTCGCTGCTAGCTGCTCAACAAGAAGGAACCACAGGGTGATCTTC
EST: TGAGCTGCTGCGCCGCCTCGTCTTCCTCTCCGGTTCTCGCCAACCCCCNN NNNNNATTCGCTGCTAGCTGCTCAACAAGAAGGAACCACAGGGTGATCTTCEST: gi|58696226|gb|CK084913.1|CK084913
genomic: TGAGCTGCTGCGCCGCCTCGTCTTCCTCTCCGGTTCTCGCCAACCCCCGGgtgagtacgc ... aaactttcagGGGGGATTCGCTGCTAGCTGCTCAACAAGAAGGAACCACAGGGTGATCTTC
EST: TGAGCTGCTGCGCCGCCTCGTCTTCCTCTCCGGTTCTCGCCAACCCCCNN NNNNNATTCGCTGCTAGCTGCTCAACAAGAAGGAACCACAGGGTGATCTTC
genomic: TGAGCTGCTGCGCCGCCTCGTCTTCCTCTCCGGTTCTCGCCAACCCCCGGgtgagtacgc ... aaactttcagGGGGGATTCGCTGCTAGCTGCTCAACAAGAAGGAACCACAGGGTGATCTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGGTGAGGGCTCGTAGCACCGTCCGGGAGGGCGGAGGAGGAGGAGAGATGAGCTGCTGCGCCGCCTCGTCTTCCTCTCCGGTTCTCGCCAACCCCCGGgtgagtacgcacgccctaccccgtcttcgccttgccggcccgccgccgccgtcctctccatcgacggcggcgtgaaattcctgcaggaatccgatgcgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccggccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccgccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggcggcg