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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGAAGAGCCGCGCGCTATGCCTTCAGCGCAACAGTATTGTTCTCCCTCTTGGTTTGCTTCGCATTGGGTTGTCGCGCCACAGATCTTTGCTATTTAAGgttagtatctctgcagaagtactgtattctacttcaatccagtcattcacatagggcattaaattatgtcaagtgtaagaaaatatgggaatagccccat...

Basic information

species Oryza sativa
transcript LOC_Os02g12810.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g12810.3 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G413069_T01 (Zea mays), 5'ss of exon 1
AGTGAAGAGCCGCGCGCTATGCCTTCAGCGCAACAGTATTGTTCTCCCTCTTGGTTTGCTTCGCATTGGGTTGTCGCGCCACAGATCTTTGCTATTTAAGgttagtatctctgcagaa-gtactgtattctacttcaatccagtcattcacatagggcattaaattatgtca-agtgtaagaaaatatgggaatagccccat
  | ||||||| || ||| |  || ||||  |||||| | ||||| || ||||| | ||||||  ||||| ||||||| ||||||||  |||||||||||||||||  ||   ||    | |   | |      | ||||   |  ||  | || |  |||| ||      | ||| || | ||  |||  |||||  ||  
CATCAAGAGCCACGAGCTCTCTCTCCAGCTAAACAGTGTCGTTCTTCCACTTGGCTCGCTTCGGGTTGGGCTGTCGCGGCACAGATCACTGCTATTTAAGgttagtgacttaacatcctgcatcatgtctatggttaatctgatagttatcttatgatattagatagcaaaagagtatatggaaggatgctaatagttcc--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29623219|gb|CB628230.1|CB628230
EST:     TTGGTTTGCTTCGCATTGGGTTGTCGCGCCACAGATCTTTGCTATTTAAG                         GTACTAGCTGATCGAGTTAATCTACCATGCAAGCTTGTCAAAGGAATATAT
genomic: TTGGTTTGCTTCGCATTGGGTTGTCGCGCCACAGATCTTTGCTATTTAAGgttagtatct ... ttggtttcagGTACTAGCTGATCGAGTTAATCTACCATGCAAGCTTGTCAAAGGAATATAT
EST: gi|29630253|gb|CB635262.1|CB635262
EST:     TTGGTTTGCTTCGCATTGGGTTGTCGCGCCACAGATCTTTGCTATTTAAG                         GTACTAGCTGATCGAGTTAATCTACCATGCAAGCTTGTCAAAGGAATATAT
genomic: TTGGTTTGCTTCGCATTGGGTTGTCGCGCCACAGATCTTTGCTATTTAAGgttagtatct ... ttggtttcagGTACTAGCTGATCGAGTTAATCTACCATGCAAGCTTGTCAAAGGAATATAT
EST: gi|29689392|gb|CB685667.1|CB685667
EST:     GTTTGCTTCGCATTGGGTTGTCGCGCCACAGATCTTTGCTATTTAAG                         GTACTAGCTGATCGAGTTAATCTACCATGCAAGCTTGTCAAAGGAATATAT
genomic: GTTTGCTTCGCATTGGGTTGTCGCGCCACAGATCTTTGCTATTTAAGgttagtatct ... ttggtttcagGTACTAGCTGATCGAGTTAATCTACCATGCAAGCTTGTCAAAGGAATATAT