1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CATTTGCACAGAATCTGATTTGGACACGTTTCCTTTCAGGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATTGCACGATATGgtaagtgatacatagcaaggattccgttcttttaatccttttctctctattgcttgatttagttctaagttcctctcattttcctgaag
species | Oryza sativa |
transcript | LOC_Os02g12800.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATTGCACGATATG TTACTCGCTCGAAGTCTGACAACCCACTCTATGGGTCTTCACTGATTGAATEST: gi|58601569|gb|CK012097.1|CK012097
genomic: AGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATTGCACGATATGgtaagtgata ... tttcctgaagTTACTCGCTCGAAGTCTGACAACCCACTCTATGGGTCTTCACTGATTGAAT
EST: AGAGACTCCTGATGGTCCTGTTTTTGAAAGCAAGGTGATTGCACGATATG TTACTCGCTCGAAGTCTGACAACCCACTCTATGGGTCTTCACTGATTGAATEST: gi|58663459|gb|CK052145.1|CK052145
genomic: AGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATTGCACGATATGgtaagtgata ... tttcctgaagTTACTCGCTCGAAGTCTGACAACCCACTCTATGGGTCTTCACTGATTGAAT
EST: AGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGTGATTGCACGATATG TTACTCGCTCGAAGTCTGACAACCCACTCTATGGGTCTTCACTGATTGAAT
genomic: AGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATTGCACGATATGgtaagtgata ... tttcctgaagTTACTCGCTCGAAGTCTGACAACCCACTCTATGGGTCTTCACTGATTGAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATTTGCACAGAATCTGATTTGGACACGTTTCCTTTCAGGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATTGCACGATATGgtaagtgatacatagcaaggattccgttcttttaatccttttctctctattgcttgatttagttctaagttcctctcattttcctgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA