Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTGTTTTTGCTGCCGCTGCTACTTCTTCCACTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctccccgattcgctacaactaactagtgtgcttgcgccattgttgcgtactgttgattttgcggatttttttttaaatttttttggatttttgtttcctcatgatgtgcag

Basic information

species Oryza sativa
transcript LOC_Os02g12800.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88675649|gb|CI729762.1|CI729762
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88973473|gb|CI717901.1|CI717901
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88593431|gb|CI713385.1|CI713385
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88351346|gb|CI627362.1|CI627362
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88730660|gb|CI754273.1|CI754273
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88402796|gb|CI613244.1|CI613244
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88389743|gb|CI626512.1|CI626512
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88354432|gb|CI624822.1|CI624822
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88972508|gb|CI717248.1|CI717248
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88724690|gb|CI747949.1|CI747949
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|33656262|gb|CF278876.1|CF278876
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|58685364|gb|CK074051.1|CK074051
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88722148|gb|CI745658.1|CI745658
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|29678878|gb|CB675153.1|CB675153
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88391242|gb|CI595496.1|CI595496
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88668271|gb|CI723010.1|CI723010
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGNGGNCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88372777|gb|CI612705.1|CI612705
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88314792|gb|CI608251.1|CI608251
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGGGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88357098|gb|CI615985.1|CI615985
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|58599056|gb|CK009584.1|CK009584
EST:     TCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: TCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88325783|gb|CI648228.1|CI648228
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88356851|gb|CI619337.1|CI619337
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88430785|gb|CI596899.1|CI596899
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|58656426|gb|CK045106.1|CK045106
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGG-CCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88314623|gb|CI606691.1|CI606691
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88370228|gb|CI585233.1|CI585233
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88668076|gb|CI722815.1|CI722815
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88668759|gb|CI719716.1|CI719716
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|58607460|gb|CK035493.1|CK035493
EST:     CTAGGGTTCGTC-TGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88423688|gb|CI617040.1|CI617040
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88370462|gb|CI587852.1|CI587852
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88412219|gb|CI573495.1|CI573495
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88731450|gb|CI755063.1|CI755063
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88363687|gb|CI609044.1|CI609044
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88423568|gb|CI579280.1|CI579280
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|58652610|gb|CK041290.1|CK041290
EST:     GCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCGAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: GCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|5667502|gb|AU077471.1|AU077471
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|58652699|gb|CK041379.1|CK041379
EST:     TCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: TCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88430286|gb|CI567305.1|CI567305
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88362359|gb|CI606549.1|CI606549
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|58673852|gb|CK062538.1|CK062538
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGG-CCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88727710|gb|CI749512.1|CI749512
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88668655|gb|CI719612.1|CI719612
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88392598|gb|CI625420.1|CI625420
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCAATGCTCGCCTCGGCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|33795619|gb|CF323679.1|CF323679
EST:     GGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: GGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88395559|gb|CI613081.1|CI613081
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|33797146|gb|CF324438.1|CF324438
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88372833|gb|CI597136.1|CI597136
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88422993|gb|CI615293.1|CI615293
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCG-CTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGGGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|33687433|gb|CF315672.1|CF315672
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88391164|gb|CI595418.1|CI595418
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88674113|gb|CI728226.1|CI728226
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88676535|gb|CI730648.1|CI730648
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88362086|gb|CI607086.1|CI607086
EST:     TAGGGTTCGTCTTGCTGCTCCCTCCACTGCCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: TAGGGTTCGTCTTGCTGCTCCCTCCACTG-CTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88673829|gb|CI727942.1|CI727942
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88359484|gb|CI621015.1|CI621015
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88668453|gb|CI722319.1|CI722319
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|58597235|gb|CK007763.1|CK007763
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCC
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCC
EST: gi|88677135|gb|CI731248.1|CI731248
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88391578|gb|CI600767.1|CI600767
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|58653428|gb|CK042108.1|CK042108
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGGCAGC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88677083|gb|CI731196.1|CI731196
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88357209|gb|CI616096.1|CI616096
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGGG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88719721|gb|CI743231.1|CI743231
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88668186|gb|CI722925.1|CI722925
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88665785|gb|CI715941.1|CI715941
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88397790|gb|CI583108.1|CI583108
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88904944|gb|CI712243.1|CI712243
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88726584|gb|CI750239.1|CI750239
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88314933|gb|CI609992.1|CI609992
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|58681115|gb|CK069802.1|CK069802
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88667046|gb|CI719182.1|CI719182
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
EST: gi|88426801|gb|CI584164.1|CI584164
EST:     CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACC                         ATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG
genomic: CTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 69 (upstream exon), 54 (downstream exon)
Score: 10

CACTGTTTTTGCTGCCGCTGCTACTTCTTCCACTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctc ... tgatgtgcagATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTC




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CACTGTTTTTGCTGCCGCTGCTACTTCTTCCACTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCgtaagatctccccgattcgctacaactaactagtgtgcttgcgccattgttgcgtactgttgattttgcggatttttttttaaatttttttggatttttgtttcctcatgatgtgcag

- - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - GCTGCT