1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GAAAGAGGCGAAGCCTTCGCGTCGCCGCTCGCCGCCACCTCGTCTTCCGCTGCGAGATCTCGCGCGAGCGCCGCCATCGGAGGAGGAGGCGCGTCGGCAGgtgagtgctcgccgattttggcggtggctttgctctaattgtgggcggatctggctgggttggtcggatctcgagccatttcggtgggggatatttttgtttgatttttttttttgcggcggtggggttttag
species | Oryza sativa |
transcript | LOC_Os02g11820.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGCGAGATCTCGCGCGAGCGCCGCCATCGGAGGAGGAGGCGCGTCGGAAG GGTTTGTGGCGGCGGCAGCGGCGGCCGGGGATCCGGGCGGCGATGGCGAGCEST: gi|88364151|gb|CI610495.1|CI610495
genomic: TGCGAGATCTCGCGCGAGCGCCGCCATCGGAGGAGGAGGCGCGTCGGCAGgtgagtgctc ... ggggttttagGGTTTGTGGCGGCGGCAGCGGCGGCCGGGGATCCGGGCGGCGATGGCGAGC
EST: TGCGAGATCTCGCGCGAGCGCCGCCATCGGAGGAGGAGGCGCGTCGGCAGGGTTTTAGEST: gi|88387238|gb|CI580583.1|CI580583
genomic: TGCGAGATCTCGCGCGAGCGCCGCCATCGGAGGAGGAGGCGCGTCGGC--------AGgtgagtgctc ... ggg
EST: TGCGAGATCTCGCGCGAGCGCCGCCATCGGAGGAGGAGGCGCGTCGGCAG GGTTTGTGGGGGCGGCAGCGGCGGCCGGGGATCCGGGCGGCGATGGCGAGCEST: gi|88401338|gb|CI585894.1|CI585894
genomic: TGCGAGATCTCGCGCGAGCGCCGCCATCGGAGGAGGAGGCGCGTCGGCAGgtgagtgctc ... ggggttttagGGTTTGTGGCGGCGGCAGCGGCGGCCGGGGATCCGGGCGGCGATGGCGAGC
EST: TGCGAGATCTCGCGCGAGCGCCGCCATCGGAGGAGGAGGCGCGTCGGCAG GGTTTGTGGCGGCGGCAGCGGCGGTCGGGGATCCGGGCGGCGATGGCGAGC
genomic: TGCGAGATCTCGCGCGAGCGCCGCCATCGGAGGAGGAGGCGCGTCGGCAGgtgagtgctc ... ggggttttagGGTTTGTGGCGGCGGCAGCGGCGGCCGGGGATCCGGGCGGCGATGGCGAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAGAGGCGAAGCCTTCGCGTCGCCGCTCGCCGCCACCTCGTCTTCCGCTGCGAGATCTCGCGCGAGCGCCGCCATCGGAGGAGGAGGCGCGTCGGCAGgtgagtgctcgccgattttggcggtggctttgctctaattgtgggcggatctggctgggttggtcggatctcgagccatttcggtgggggatatttttgtttgatttttttttttgcggcggtggggttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG