1 5' 3' | 2 5' 3' | 3 5' 3' |
AGAACACCAGCCAGGAATCAGAAGCCAGAAGCAGCAACGCTCGCTCTGATTCTTTCTTTCCTCCTCGAGCTAGgtgcgtagttgtcatatttgatcgatcggttttagttcttcttgtttaattttgattgcgcttgtag
species | Oryza sativa |
transcript | LOC_Os02g10800.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCCAGAAGCAGCAACGCTCGCTCTGATTCTTTCTTTCCTCCTCGAGCTAG CAGCAGGAAGTAGTTTTAATTTTGGTGTGATCGATGGCGGCGATGATGGCGEST: gi|88583787|gb|CI701294.1|CI701294
genomic: GCCAGAAGCAGCAACGCTCGCTCTGATTCTTTCTTTCCTCCTCGAGCTAGgtgcgtagtt ... gcgcttgtagCAGCAGGAAGTAGTTTTAATTTTGGTGTGATCGATGGCGGCGATGATGGCG
EST: GCCAGAAGCAGCAACGCTCGCTCTGATTCTTTCTTTCCTCCTCGAGCTAG CAGCAGGAAGTAGTTTTAATTTTGGTGTGATCGATGGCGGCGATGATGGCGEST: gi|88577943|gb|CI674560.1|CI674560
genomic: GCCAGAAGCAGCAACGCTCGCTCTGATTCTTTCTTTCCTCCTCGAGCTAGgtgcgtagtt ... gcgcttgtagCAGCAGGAAGTAGTTTTAATTTTGGTGTGATCGATGGCGGCGATGATGGCG
EST: GCCAGAAGCAGCAACGCTCGCTCTGATTCTTTCTTTCCTCCTCGAGCTAG CAGCAGGAAGTAGTTTTAATTTTGGTGTGATCGATGGCGGCGATGATGGCGEST: gi|88693718|gb|CI737293.1|CI737293
genomic: GCCAGAAGCAGCAACGCTCGCTCTGATTCTTTCTTTCCTCCTCGAGCTAGgtgcgtagtt ... gcgcttgtagCAGCAGGAAGTAGTTTTAATTTTGGTGTGATCGATGGCGGCGATGATGGCG
EST: GCCAGAAGCAGCAACGCTCGCTCTGATTCTTTCTTTCCTCCTCGAGCT-- -AGCAGGAAGTAGTTTTAATTTTGGTGTGATCGATGGCGGCGATGATGGCG
genomic: GCCAGAAGCAGCAACGCTCGCTCTGATTCTTTCTTTCCTCCTCGAGCTAGgtgcgtagtt ... gcgcttgtagCAGCAGGAAGTAGTTTTAATTTTGGTGTGATCGATGGCGGCGATGATGGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAACACCAGCCAGGAATCAGAAGCCAGAAGCAGCAACGCTCGCTCTGATTCTTTCTTTCCTCCTCGAGCTAGgtgcgtagttgtcatatttgatcgatcggttttagttcttcttgtttaattttgattgcgcttgtag
- - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC