1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CTGCCGATCCACACGCGCGAACGCGCCTCTCTCGCCGATCCCCCTCCTTCGAGAGCTTCGTCTCCGAGGCATTTCGGAGCATTGAGCGGCACAGGCAAAGgcaatcccccgctttcttgatttttttttctttttcgtggttcatatcatcggcggtcggcattttaatctgtatgaaactggcgcgtgtgttggtgatc...
species | Oryza sativa |
transcript | LOC_Os02g10470.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAGAGCTTCGTCTCCGAGGCATTTCGGAGCATTGAGCGGCACAGGCAAAG GGAAGTGGCTTCTATCACCCTACAAAATTGCGTTGTTTGCTGAAATGGGGGEST: gi|33693673|gb|CF321912.1|CF321912
genomic: GAGAGCTTCGTCTCCGAGGCATTTCGGAGCATTGAGCGGCACAGGCAAAGgcaatccccc ... acatttgcagGGAAGTGGCTTCTATCACCCTACAAAATTGCGTTGTTTGCTGAAATGGGGG
EST: GAGAGCTTCGTCTCCGAGGCATTTCGGAGCATTGAGCGGCACAGGCAAAG GGAAGTGGCTTCTATCACCCTACAAAATTGCGTTGTTTGCTGAAATGGGGG
genomic: GAGAGCTTCGTCTCCGAGGCATTTCGGAGCATTGAGCGGCACAGGCAAAGgcaatccccc ... acatttgcagGGAAGTGGCTTCTATCACCCTACAAAATTGCGTTGTTTGCTGAAATGGGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGCCGATCCACACGCGCGAACGCGCCTCTCTCGCCGATCCCCCTCCTTCGAGAGCTTCGTCTCCGAGGCATTTCGGAGCATTGAGCGGCACAGGCAAAGgcaatcccccgctttcttgatttttttttctttttcgtggttcatatcatcggcggtcggcattttaatctgtatgaaactggcgcgtgtgttggtgatc
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcggcgg