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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAGCGATGGGCGCGGCGGTGGTCCGGCGGCTCCACGCGGCGCAGGCGCAGGCGCAGCCCCCGCGGCTGACGAAGCTCGCGCTTCGCGCGCCCAAATTCgtgagttccttcccctcccaaaagcagttgcactgttccaatcccttgttcaacgtcgcggcgacttgctggtgaacgagattacgagggtatatgacaa...

Basic information

species Oryza sativa
transcript LOC_Os02g10430.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g10430.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G006277_T01 (Zea mays), 5'ss of exon 1
---TGCAGCGA-TGGGCGCGGCG--GTGGTCCGGCGGCTCCACGCGGCGCAGGCGCAGGCGCAGCCCCCGCGGCTGACGAAGCTCGCGCTTCGCGCGCCCAAATTCgtgagttccttcccctcccaaaagcagttgcactgttccaatcccttgttca-acgtcgcggcgacttgctggtgaacgagatt-acgagggtatatgacaa
   |   |||  ||  |  ||||  ||| |||||||||| ||  |||||     || |||||||||||| || ||||||||  ||||||| | | |||||||||||||||||  |  |  | |  |  | |||  ||  |  |||   |||   | |  |  ||  | | || |   |    ||  |||| | | || | | |     
GTCTATGGCGGCTGCACTGGGCGCCGTGCTCCGGCGGCTGCATACGGCG-----GC-GGCGCAGCCCCCTCGCCTGACGAAATTCGCGCTGCACCCGCCCAAATTCgtgagtctccgcttcccagacgaccagc-gc-ttcctcctcccccacatccgtagatcctgcctacctcaggtcttacctgattcatgcggctctctactgc