1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GATGGGCCGCAAGAGGAGGGCTAGGGTTTCCCGCGACGGCGACGGCGAGGAGGAGGAGGAGCCCGCGCCGGTCGCCGCAGAGAGCAAGAGCCTCTACGAGgtaaatccccaactccaaaccctaggtctatggcttacgaggtgttacccgtacgggtagcggttgattttgcggcggggtggtgttggtctgatcgaat...
species | Oryza sativa |
transcript | LOC_Os02g10220.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGGAGGAGGAGCCCGCGCCGGTCGCCGCAGAGAGCGAGAGCCTCTACGAG ATCTTAGGGGTTGAGAGGACAGCTTCACAGCAGGAAATAAAGAAGGCTTATEST: gi|58597973|gb|CK008501.1|CK008501
genomic: AGGAGGAGGAGCCCGCGCCGGTCGCCGCAGAGAGCAAGAGCCTCTACGAGgtaaatcccc ... cattctgaagATCTTAGGGGTTGAGAGGACAGCTTCACAGCAGGAAATAAAGAAGGCTTAT
EST: AGGAGGAGGAGCCCGCGCCGGTCGCCGCAGAGAGCAAGAGCCTCTACGAG ATCTTAGGGGTTGAGAGGACAGCTTCACAGCAGGAAATAAAGAAGGCTTATEST: gi|12404797|gb|AU166398.1|AU166398
genomic: AGGAGGAGGAGCCCGCGCCGGTCGCCGCAGAGAGCAAGAGCCTCTACGAGgtaaatcccc ... cattctgaagATCTTAGGGGTTGAGAGGACAGCTTCACAGCAGGAAATAAAGAAGGCTTAT
EST: AGGAGGAGGAGCCCGCGCCGGTCGCCGCAGAGAGCAAGAGCCTCTACGAG ATCTTAGGGGTTGAGAGGACAGCTTCACAGCAGGAAATAAAGAAGGCTTATEST: gi|13807068|gb|AU181798.1|AU181798
genomic: AGGAGGAGGAGCCCGCGCCGGTCGCCGCAGAGAGCAAGAGCCTCTACGAGgtaaatcccc ... cattctgaagATCTTAGGGGTTGAGAGGACAGCTTCACAGCAGGAAATAAAGAAGGCTTAT
EST: AGGAGGAGGAGCCCGCGCCGGTCGCCGCAGAGAGCAAGAGCCTCTACGAG ATCTTAGGGGTTGAGAGGACAGCTTCACAGCAGGAAATAAAGAAGGCTTAT
genomic: AGGAGGAGGAGCCCGCGCCGGTCGCCGCAGAGAGCAAGAGCCTCTACGAGgtaaatcccc ... cattctgaagATCTTAGGGGTTGAGAGGACAGCTTCACAGCAGGAAATAAAGAAGGCTTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGGGCCGCAAGAGGAGGGCTAGGGTTTCCCGCGACGGCGACGGCGAGGAGGAGGAGGAGCCCGCGCCGGTCGCCGCAGAGAGCAAGAGCCTCTACGAGgtaaatccccaactccaaaccctaggtctatggcttacgaggtgttacccgtacgggtagcggttgattttgcggcggggtggtgttggtctgatcgaat
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcggcg