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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCGGGAGCGCTTTGAACAATCGCTCTCTCTCTCTCTCCCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAGCgtaagtgcatttcatctctcccggttgcgatcctgttcgccgtaggctgtaggattcctgggcgggtggttgtgtagatggatttttttatgtggaattt...

Basic information

species Oryza sativa
transcript LOC_Os02g10070.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29614058|gb|CB619071.1|CB619071
EST:     CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAGCC                         A
genomic: CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAG-Cgtaagtgcat ... tgcgcagcag-
EST: gi|29614058|gb|CB619071.1|CB619071
EST:     CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAGCC                         A
genomic: CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAG-Cgtaagtgcat ... tgcgcagcag-
EST: gi|29614058|gb|CB619071.1|CB619071
EST:     CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAGCC                         A
genomic: CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAG-Cgtaagtgcat ... tgcgcagcag-
EST: gi|58693317|gb|CK082004.1|CK082004
EST:     CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAGC                         CTTGCCCTGTAGCCGCGTGCTCCGGCCATGGCGTTCTTCAGGGGCCTGACC
genomic: CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAGCgtaagtgcat ... tgcgcagcagCTTGCCCTGTAGCCGCGTGCTCCGGCCATGGCGTTCTTCAGGGGCCTGACC
EST: gi|58658570|gb|CK047250.1|CK047250
EST:     CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGGGAAATTCTCCAAAGCC                         A
genomic: CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAG-Cgtaagtgcat ... tgcgcagcag-
EST: gi|58658570|gb|CK047250.1|CK047250
EST:     CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGGGAAATTCTCCAAAGCC                         A
genomic: CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAG-Cgtaagtgcat ... tgcgcagcag-
EST: gi|58658570|gb|CK047250.1|CK047250
EST:     CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGGGAAATTCTCCAAAGCC                         A
genomic: CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAG-Cgtaagtgcat ... tgcgcagcag-
EST: gi|29667252|gb|CB663527.1|CB663527
EST:     CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAGCC                         A
genomic: CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAG-Cgtaagtgcat ... tgcgcagcag-
EST: gi|29667252|gb|CB663527.1|CB663527
EST:     CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAGCC                         A
genomic: CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAG-Cgtaagtgcat ... tgcgcagcag-
EST: gi|29667252|gb|CB663527.1|CB663527
EST:     CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAGCC                         A
genomic: CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAG-Cgtaagtgcat ... tgcgcagcag-
EST: gi|88400849|gb|CI616854.1|CI616854
EST:     CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAGCC                         A
genomic: CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAG-Cgtaagtgcat ... tgcgcagcag-
EST: gi|88400849|gb|CI616854.1|CI616854
EST:     CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAGCC                         A
genomic: CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAG-Cgtaagtgcat ... tgcgcagcag-
EST: gi|88400849|gb|CI616854.1|CI616854
EST:     CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAGCC                         A
genomic: CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAG-Cgtaagtgcat ... tgcgcagcag-
EST: gi|58611144|gb|CK038856.1|CK038856
EST:     CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAGCC                         A
genomic: CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAG-Cgtaagtgcat ... tgcgcagcag-
EST: gi|58611144|gb|CK038856.1|CK038856
EST:     CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAGCC                         A
genomic: CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAG-Cgtaagtgcat ... tgcgcagcag-
EST: gi|58611144|gb|CK038856.1|CK038856
EST:     CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAGCC                         A
genomic: CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAG-Cgtaagtgcat ... tgcgcagcag-
EST: gi|29614020|gb|CB619033.1|CB619033
EST:     CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAGCC                         A
genomic: CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAG-Cgtaagtgcat ... tgcgcagcag-
EST: gi|29614020|gb|CB619033.1|CB619033
EST:     CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAGCC                         A
genomic: CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAG-Cgtaagtgcat ... tgcgcagcag-
EST: gi|29614020|gb|CB619033.1|CB619033
EST:     CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAGCC                         A
genomic: CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAG-Cgtaagtgcat ... tgcgcagcag-
EST: gi|58695278|gb|CK083965.1|CK083965
EST:     CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAGCC                         A
genomic: CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAG-Cgtaagtgcat ... tgcgcagcag-
EST: gi|58695278|gb|CK083965.1|CK083965
EST:     CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAGCC                         A
genomic: CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAG-Cgtaagtgcat ... tgcgcagcag-
EST: gi|58695278|gb|CK083965.1|CK083965
EST:     CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAGCC                         A
genomic: CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAG-Cgtaagtgcat ... tgcgcagcag-
EST: gi|58690828|gb|CK079515.1|CK079515
EST:     CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAGCC                         A
genomic: CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAG-Cgtaagtgcat ... tgcgcagcag-
EST: gi|58690828|gb|CK079515.1|CK079515
EST:     CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAGCC                         A
genomic: CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAG-Cgtaagtgcat ... tgcgcagcag-
EST: gi|58690828|gb|CK079515.1|CK079515
EST:     CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAGCC                         A
genomic: CCTCCCCGATTCGATTCAATTCGCGACGCCTCCGTGAAATTCTCCAAAG-Cgtaagtgcat ... tgcgcagcag-