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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGAGGGGCCAAGAATGGCGGCGCTGGCCGCCGCATTGGTTGGGTTTCTTCTTGCTGTCTCGTCGGCGCCGGCGGGAGCCACCACCGACGCCTCCGACGgtgagctgcggcccacgattcatggggttcttggttttcttggaatgttcaggaaatcttgttttctttttcctttgatggttggggtgttgttgcag

Basic information

species Oryza sativa
transcript LOC_Os02g09740.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88360457|gb|CI608459.1|CI608459
EST:     TCTTGCTGTCTCGTCGGCGCCGGCGGGAGC-ACCACCGACGCCTCCGAGG                         CTGCGGCGCTTGGGAATCTGTA
genomic: TCTTGCTGTCTCGTCGGCGCCGGCGGGAGCCACCACCGACGCCTCCGACGgtgagctgcg ... gttgttgcagCTGCGGCGCTTGGGAATCTGTA
EST: gi|88310800|gb|CI659403.1|CI659403
EST:     TCTTGCTGTCTCGTCGGCGCCGGCGGGAGCCACCACCGACGCCTCCGACG                         CTGCGGCGCTTGGGAATCTGTATTCGTCGTGGAACAGCCCGTCGCAGCTGG
genomic: TCTTGCTGTCTCGTCGGCGCCGGCGGGAGCCACCACCGACGCCTCCGACGgtgagctgcg ... gttgttgcagCTGCGGCGCTTGGGAATCTGTATTCGTCGTGGAACAGCCCGTCGCAGCTGG
EST: gi|88721234|gb|CI744533.1|CI744533
EST:     TCTTGCTGTCTCGTCGGCGCCGGCGGGAGCCACCACCGACGCCTCCGACG                         CTGCGGCGCTTGGGAATCTGTATTCGTCGTGGAACAGCCCGTCGCAGCTGG
genomic: TCTTGCTGTCTCGTCGGCGCCGGCGGGAGCCACCACCGACGCCTCCGACGgtgagctgcg ... gttgttgcagCTGCGGCGCTTGGGAATCTGTATTCGTCGTGGAACAGCCCGTCGCAGCTGG
EST: gi|88575273|gb|CI669418.1|CI669418
EST:     TCTTGCTGTCTCGTCGGCGCCGGCGGGAGCCACCACCGACGCCTCCGACG                         CTGCGGCGCTTGGGAATCTGTATTCGTCGTGGAACAGCCCGTCGCAGCTGG
genomic: TCTTGCTGTCTCGTCGGCGCCGGCGGGAGCCACCACCGACGCCTCCGACGgtgagctgcg ... gttgttgcagCTGCGGCGCTTGGGAATCTGTATTCGTCGTGGAACAGCCCGTCGCAGCTGG
EST: gi|88726154|gb|CI749809.1|CI749809
EST:     TCTTGCTGTCTCGTCGGCGCCGGCGGGAGCCACCACCGACGCCTCCGACG                         CTGCGGCGCTTGGGAATCTGTATTCGTCGTGGAACAGCCCGTCGCAGCTGG
genomic: TCTTGCTGTCTCGTCGGCGCCGGCGGGAGCCACCACCGACGCCTCCGACGgtgagctgcg ... gttgttgcagCTGCGGCGCTTGGGAATCTGTATTCGTCGTGGAACAGCCCGTCGCAGCTGG