1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CCTGCCCTTCTCCTCCGGGAACCCACGCATCGAGGAGACCCGCGGCGTCGTCCTCCTCCACCCCGAACCACCCGCCGCCTCGTCCTCGTCCCTTCTCCCGgtaagccaccccctcctccccttcgatggccctcgtaatcgccttctcaatgttctcgttcgcgcgcttgtcttgccag
species | Oryza sativa |
transcript | LOC_Os02g09060.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCCTCCTCCACCCCGAACCACCCGCCGCCTCGTCCTCGTCCCTTCTCCCG GTGGGGAGGAAGCCGCGGGTGTGCGTGCCTGGCGTGCCCAACCACCTGACCEST: gi|88580349|gb|CI697269.1|CI697269
genomic: TCCTCCTCCACCCCGAACCACCCGCCGCCTCGTCCTCGTCCCTTCTCCCGgtaagccacc ... gtcttgccagGTGGGGAGGAAGCCGCGGGTGTGCGTGCCTGGCGTGCCCAACCACCTGACC
EST: TCCTCCTCCACCCCGAACCACCCGCCGCCTCGTCCTCGTCCCTTCTCCCG GTGGGGAGGAAGCCGCGGGTGTGCGTGCCTGGCGTGCCCAACCACCTGACCEST: gi|88587192|gb|CI704925.1|CI704925
genomic: TCCTCCTCCACCCCGAACCACCCGCCGCCTCGTCCTCGTCCCTTCTCCCGgtaagccacc ... gtcttgccagGTGGGGAGGAAGCCGCGGGTGTGCGTGCCTGGCGTGCCCAACCACCTGACC
EST: CCTCCTCCNA-CCCGAACCACCCGCCGCCTCGTCCTCGTCCCTTCTCCCG GTGGGGAGGAAGCCGCGGGTGTGCGTGCCTGGCGTGCCCAACCACCTGACCEST: gi|88436585|gb|CI691313.1|CI691313
genomic: CCTCCTCC-ACCCCGAACCACCCGCCGCCTCGTCCTCGTCCCTTCTCCCGgtaagccacc ... gtcttgccagGTGGGGAGGAAGCCGCGGGTGTGCGTGCCTGGCGTGCCCAACCACCTGACC
EST: TCCTCCTCCACCCCGAACCACCCGCCGCCTCGTCCTCGTCCCTTCTCCCG GTGGGGAGGAAGCCGCGGGTGTGCGTGCCTGGCGTGCCCAACCACCTGACCEST: gi|88405001|gb|CI685440.1|CI685440
genomic: TCCTCCTCCACCCCGAACCACCCGCCGCCTCGTCCTCGTCCCTTCTCCCGgtaagccacc ... gtcttgccagGTGGGGAGGAAGCCGCGGGTGTGCGTGCCTGGCGTGCCCAACCACCTGACC
EST: TCCTCCTCCACCCCGAACCACCCGCCGCCTCGTCCTCGTCCCTTCTCCCG GTGGGGAGGAAGCCGCGGGTGTGCGTGCCTGGCGTGCCCAACCACCTGACCEST: gi|88440811|gb|CI693379.1|CI693379
genomic: TCCTCCTCCACCCCGAACCACCCGCCGCCTCGTCCTCGTCCCTTCTCCCGgtaagccacc ... gtcttgccagGTGGGGAGGAAGCCGCGGGTGTGCGTGCCTGGCGTGCCCAACCACCTGACC
EST: TCCTCCTCCACCCCGAACCACCCGCCGCCTCGTCCTCGTCCCTTCTCCCG GTGGGGAGGAAGCCGCGGGTGTGCGTGCCTGGCGTGCCCAACCACCTGACCEST: gi|88378864|gb|CI681683.1|CI681683
genomic: TCCTCCTCCACCCCGAACCACCCGCCGCCTCGTCCTCGTCCCTTCTCCCGgtaagccacc ... gtcttgccagGTGGGGAGGAAGCCGCGGGTGTGCGTGCCTGGCGTGCCCAACCACCTGACC
EST: TCCTCCTCCACCCCGAACCACCCGCCGCCTCGTCCTCGTCCCTTCTCCCG GTGGGGAGGAAGCCGCGGGTGTGCGTGCCTGGCGTGCCCAACCACCTGACC
genomic: TCCTCCTCCACCCCGAACCACCCGCCGCCTCGTCCTCGTCCCTTCTCCCGgtaagccacc ... gtcttgccagGTGGGGAGGAAGCCGCGGGTGTGCGTGCCTGGCGTGCCCAACCACCTGACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTGCCCTTCTCCTCCGGGAACCCACGCATCGAGGAGACCCGCGGCGTCGTCCTCCTCCACCCCGAACCACCCGCCGCCTCGTCCTCGTCCCTTCTCCCGgtaagccaccccctcctccccttcgatggccctcgtaatcgccttctcaatgttctcgttcgcgcgcttgtcttgccag
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