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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGGGGCTCCCGCGGCGGTGCTCGTGCTGCCGCTGCTGCTGCTGATCGCCGCGGCGGCATTGCCCCGGCGGGCGCTCGCGGCCACCGTCGCCGCCGATGgtaagtgctccgcgctcgcgcttcgtgcttggatgctttgctcgtacgtgttgcactagcttttggttggtggccgttggtcgttgcactgtttgcggag...

Basic information

species Oryza sativa
transcript LOC_Os02g07960.4
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g07960.3 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G020986_T01 (Zea mays), 5'ss of exon 1
AGAGGGGCTCCCGCGGCGGTGCTCGTGCTGCCGCTGCTGCTGCTGATCGCCGCGGCGGCATTGCCCCGGCGGGCGCTCGCGGCCACCGTCGCCGCCGATGgtaa-gtgctccgcgctcgcgctt-cgtgcttggatgctttgctcgtacgtgttgcactagcttttggttggtggccgttggtcgttgcactgtttgcggag
    | ||    | ||||| ||  || ||    |||||||||||| ||||||| || |||||||| ||||||||   ||||||||||| ||||| ||| ||||| | |  |  |      |||  | | |||   | ||| ||| |   ||    |   || ||       |  ||||      | | |  || | ||    
GACCGAGCGATGGGGGCGGCGCCGGTCCTCGTCCTGCTGCTGCTGGTCGCCGCTGCCGCATTGCCGCGGCGGGCAAGCGCGGCCACCGACGCCGGCGACGgtaatgcgtcctcctaatctgctcgcttccttccttccttcgcttgactgtaacccggcag-ttggcacgaggagccgcaaactgcttcg-tgctcgcttgt

upper sequence: LOC_Os02g07960.3 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G335638_T01 (Zea mays), 5'ss of exon 1
-AGAGGGGCTCCCGCGGCGGTGCTCGTGCTGCCGCTGCTGCTGCTGATCGCCGCGGCGGCATTGCCCCGGCGGGCGCTCGCGGCCACCGTCGCCGCCGATGgtaagtgctccgcgctcgcgcttcgtgcttggatgctttgctcgtacgtgttgcactagcttttggttggtggccgttggtcgt-tgcactgtttgcggag---
  | | | |  || ||| |  || |  |    || | ||||||||||||||||| ||  ||||||| |||| ||||| ||||| ||||| ||||| ||| |||||   | ||  ||||  |||   | ||||  |   || |||       ||| |  || |    ||| |    |    |  |  ||||| |  ||| ||    
CGGTGCGTCCGCCTCGGGGCGGCGCCGGTCCTCG-TCCTGCTGCTGATCGCCGCTGCCACATTGCCGCGGCTGGCGCGCGCGGTCACCGACGCCGGCGACGgtaacc-caccctgctc-tgctcgcttcttgtctcacttcctccgcttgattgta--agttggcagtttgcacgcaccagctgcctgcacgggctgccgactgg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29626064|gb|CB631075.1|CB631075
EST:     CGCGGCGGCATTGCCCCGGCGGGCGCTCGCGGCCACCGTCGCCGCCGATG                         TTGCTGCTATAAATGGACTGTATGTTGCACTTGGATCACCGGCTCTTCCTA
genomic: CGCGGCGGCATTGCCCCGGCGGGCGCTCGCGGCCACCGTCGCCGCCGATGgtaagtgctc ... ttatgggcagTTGCTGCTATAAATGGACTGTATGTTGCACTTGGATCACCGGCTCTTCCTA
EST: gi|86831768|gb|CI303208.1|CI303208
EST:     CGCGGCGGCATTGCCCCGGCGGGCGCTCGCGGCCACCGTCGCCGCCGATG                         TTGCTGCTATAAATGGACTGTATGTTGCACTTGGATCACCGGCTCTTCCTA
genomic: CGCGGCGGCATTGCCCCGGCGGGCGCTCGCGGCCACCGTCGCCGCCGATGgtaagtgctc ... ttatgggcagTTGCTGCTATAAATGGACTGTATGTTGCACTTGGATCACCGGCTCTTCCTA
EST: gi|29621905|gb|CB626916.1|CB626916
EST:     CGCGGCGGCATTGCCCCGGCGGGCGCTCGCGGCCACCGTCGCCGCCGATG                         TTGCTGCTATAAATGGACTGTATGTTGCACTTGGATCACCGGCTCTTCCTA
genomic: CGCGGCGGCATTGCCCCGGCGGGCGCTCGCGGCCACCGTCGCCGCCGATGgtaagtgctc ... ttatgggcagTTGCTGCTATAAATGGACTGTATGTTGCACTTGGATCACCGGCTCTTCCTA