1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CGCCCAGAAGATCACCGACGACACCCGCATCCGCGCGTCCGTGCCCACTGTCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCATCTGgtcagtgagcaccccctgccatcgatccttgaccctcccgcgctttcgatctgcaaagtggcatgctactttagatttttttgggttctaggggtggatg...
species | Oryza sativa |
transcript | LOC_Os02g07260.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCATCTG GGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCAEST: gi|58675077|gb|CK063764.1|CK063764
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCATCTGgtcagtgagc ... taacctccagGGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCATCTG GGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCAEST: gi|88362801|gb|CI614157.1|CI614157
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCATCTGgtcagtgagc ... taacctccagGGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCATCTG GGCCGTCCGAAGGGTGTCACCCCCAAGTA-AGCTTGAAGCCTCTTGTTCCAEST: gi|29656603|gb|CB652878.1|CB652878
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCATCTGgtcagtgagc ... taacctccagGGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCATCTG GGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCAEST: gi|14574908|gb|AU197198.1|AU197198
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCATCTGgtcagtgagc ... taacctccagGGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCATCTG GGCCGTCCGAA-GGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCAEST: gi|13806339|gb|AU181481.1|AU181481
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCATCTGgtcagtgagc ... taacctccagGGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: GCCAAGGTCATCCTCGCCAGCCATCTG GGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCAEST: gi|33794797|gb|CF323278.1|CF323278
genomic: GCCAAGGTCATCCTCGCCAGCCATCTGgtcagtgagc ... taacctccagGGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCATCTG GGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCAEST: gi|58667980|gb|CK056666.1|CK056666
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCATCTGgtcagtgagc ... taacctccagGGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCATCTG GGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCAEST: gi|33690674|gb|CF318913.1|CF318913
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCATCTGgtcagtgagc ... taacctccagGGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCATCTG GGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCAEST: gi|300216018|gb|HO088644.1|HO088644
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCATCTGgtcagtgagc ... taacctccagGGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: GGCGCC-AGGTCATCCTCGCCAGCCATCTG GGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCAEST: gi|13904803|gb|BF889441.1|BF889441
genomic: GGCGCCAAGGTCATCCTCGCCAGCCATCTGgtcagtgagc ... taacctccagGGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCATCTG GGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCAEST: gi|2310338|gb|C26493.1|C26493
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCATCTGgtcagtgagc ... taacctccagGGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCATCTG GGCCGTCCGAAGG-TGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCAEST: gi|29676664|gb|CB672939.1|CB672939
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCATCTGgtcagtgagc ... taacctccagGGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCATCTG GGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCAEST: gi|33793275|gb|CF322518.1|CF322518
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCATCTGgtcagtgagc ... taacctccagGGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCATCTG GGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCAEST: gi|33797454|gb|CF324587.1|CF324587
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCATCTGgtcagtgagc ... taacctccagGGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCATCTG GGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCAEST: gi|29686925|gb|CB683200.1|CB683200
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCATCTGgtcagtgagc ... taacctccagGGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCATCTG GGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCAEST: gi|32947941|gb|BP184513.1|BP184513
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCATCTGgtcagtgagc ... taacctccagGGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCATCTG GGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCAEST: gi|29656155|gb|CB652430.1|CB652430
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCATCTGgtcagtgagc ... taacctccagGGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCATCTG GGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCAEST: gi|29614437|gb|CB619450.1|CB619450
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCATCTGgtcagtgagc ... taacctccagGGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: TCGAGAAGGGCGCCACGGTCATCCTCGCCAGCCATCTG GGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCAEST: gi|27554028|gb|CA997928.1|CA997928
genomic: TCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCATCTGgtcagtgagc ... taacctccagGGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCATCTG GGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCAEST: gi|4878615|gb|AU062914.1|AU062914
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCATCTGgtcagtgagc ... taacctccagGGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: CTCCTCGAGAAGGGCGCCAAGGTCATCCTCATCAGCCATCTG GGCCGTCCGAA-GGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCAEST: gi|117247218|gb|CT848558.1|CT848558
genomic: CTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCATCTGgtcagtgagc ... taacctccagGGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCATCTG GGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCATCTGgtcagtgagc ... taacctccagGGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCCCAGAAGATCACCGACGACACCCGCATCCGCGCGTCCGTGCCCACTGTCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCATCTGgtcagtgagcaccccctgccatcgatccttgaccctcccgcgctttcgatctgcaaagtggcatgctactttagatttttttgggttctaggggtggatg
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