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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGGCGCGGCGAGCGGCGGCGGCGCCGCCGGCGCCGGCTGCCCGACGCCGACACTGATCGACGTCGATCTCAACAAGTGCGAGCCATGGGACCTCCCAGgtatacatcctgcatgattttgctagctagtaaattgtcttgatttctaccacatcacaagcacttgtaaagctgtgtaattattggtggtttaatttag...

Basic information

species Oryza sativa
transcript LOC_Os02g06950.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g06950.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G063522_T01 (Zea mays), 5'ss of exon 1
GGTGGCGCGGCGAGCGGCGGCGGCGCCGCCGGCGCCGGCTGCC-CGACGCCGACAC--TGATCGACGTCGATCTCAACAAGTGCGAGCCATGGGACCTCCCAGgtatacatcctgcatgattttgctagctagtaaattgtcttgatttctaccacatcacaagcacttgtaaagctgtgtaattattggtggtttaatttag---
    || ||||| ||||||| ||| | |  |  |   ||  |  || |  |  |||  || |||||||||||||||||||||||||||| |||||||| || |||||  |    | | |        |  |  |||  |  |||| ||  | |     |   |   || |  ||| | ||  || || |    |||    | |   
--AAGCTCGGCG-GCGGCGGAGGCCCTGTGGTGGTGAGCATCTACGGCTGCCCCACCATGGTCGACGTCGATCTCAACAAGTGCGAGCCCTGGGACCTTCCCGgtatgtaagacg-acggcgcctacacatgctaatataacttgcttgttcctgt-ccttgatttctggccaagat-tgatatgatcgagcttttccccttgcca

upper sequence: LOC_Os02g06950.1 (Oryza sativa), 5'ss of exon 1
lower sequence: AT1G56010.2 (Arabidopsis thaliana), 5'ss of exon 1
---GGTGGCGCGGCGAG-CGGCGGCGGCGCCGCCGGCGCCGGCTGCCCGACGCCGACACTGATCGACGTCGATCTCAACAAGTGCGAGCCATGGGACCTCCCAGgtatacatcctgcatgattttgctagctagtaaattgtcttgatttctaccacatcacaagcacttgtaaagctgtgtaattattggtggtttaatttag---
   | |  |  |  ||| ||   ||  | |      |  || |  ||    | |    |||||| | ||||||||||||||||| ||||| |||||| ||||| |||    |         | |||  | | ||||  || | |||||   ||   |           |||  | | |  ||   ||| |  | ||   |   |   
TGCGATTACTTGATGAGACGATCGCTTCACAATAATCATCGACCACCTCTTGTC----CTGATCCAAGTCGATCTCAACAAGTGTGAGCCTTGGGACATCCCAAgtacgt-tttcattcattcttgacaac-agtatctt-tattgatccatatatctctgttttactttgatatggttggtccatatagaagattatgtcatgatc

upper sequence: LOC_Os02g06950.1 (Oryza sativa), 5'ss of exon 1
lower sequence: AT3G12977.1 (Arabidopsis thaliana), 5'ss of exon 1
---GGTGGCGCGGCGAGCGGCGGCGGCGCCGCCGGCGCCGGCTGCCCGACGCCGACACTGATCGACGTCGATCTCAACAAGTGCGAGCCATGGGACCTCCCAGgtataca-tcctgcatgattttgctagctagtaaat-tgtct----tgatttctaccacatcacaagcacttgtaaagctgtgtaattattggtggtttaatttag
    ||| |      |  |   |  |  |||   ||  |  ||  |   |        |||||||||||||||| ||||| |||||||| |||||| | ||  |||   | | |||  |         | || | || | | | |    |  |||  ||||   ||   | |  | | ||  |   ||||| ||| |  |  ||     
GTCTGTGAC-TACTTAATG--AGAAGAACCGTTCGCAGCCTCTATCAACCAGTTGTCTTGATCGACGTCGATCTTAACAAATGCGAGCCTTGGGACATTCCTCgtaagtaattctgtgtttacacaacatctcgcaactctatatcatatagtttaaaccattccatcggtagctattaaa-tccataattcttgtt--tccaaca---

upper sequence: LOC_Os02g06950.1 (Oryza sativa), 5'ss of exon 1
lower sequence: EFJ11746 (Selaginella moellendorffii), 5'ss of exon 1
GGTGGCGCGGCGAGCGGCGGCGGCGCCGCCGGCGCCGGCTGCCCGACGCCGACACTGATCGACGTCGATCTCAACAAGTGCGAGCCATGGGACCTCCCAGgtatacatc--ctgcatgattttgctagctagtaaattgtcttgatttctaccacatcacaagcacttgtaaagctgtgtaattattggtggtttaatttag---------------------------------------------------------------------------------------------
     |        || |      | || |  | |    | |  | |||   |  |   ||| |||||||||||||||| |||||||||||| || || ||||   |    ||   | || ||       | |   || | |   || ||  |||        |  |  |     ||  |         ||  || ||                                                                                                 
ATCACCTTCTACCTCGTCAAGAAGGTCGTCAACACAAAATTCGTGGCGCACGCCATCGCCGAGGTCGATCTCAACAAGTTCGAGCCATGGGATCTACCCGgtaaggaggaactctctcatcttctctcgcattcgcttctatcatttcctctcactctctcgacgttcttgggcttgaatttgctgcattgcattcatggcattccaaggaacttggaatcgatcacttgggtcgagttgcctggacgaaattcctctaaaaatctctcctttgttcttttttctttcccggcag

upper sequence: LOC_Os02g06950.1 (Oryza sativa), 5'ss of exon 1
lower sequence: EFJ22540 (Selaginella moellendorffii), 5'ss of exon 1
GGTGGCGCGGCGAGCGGCGGCGGCGCCGCCGGCGCCGGCTGCCCGACGCCGACACTGATCGACGTCGATCTCAACAAGTGCGAGCCATGGGACCTCCCAGgtatacatc--ctgcatgattttgctagctagtaaattgtcttgatttctaccacatcacaagcacttgtaaagctgtgtaattattggtggtttaatttag---------------------------------------------------------------------------------------------
     |        || |      | || |  | |    | | || |||   |  |   ||| |||||||||||||||| |||||||||||| || || ||||   |    ||     || ||       | |   || | |   || ||  |||        |  |  |     ||  |         ||  || ||                                                                                                 
ATCACCTTCTACCTCGTCAAGAAGGTCGTCAACACAAAATTCGCGGCGCACGCCATCGCCGAGGTCGATCTCAACAAGTTCGAGCCATGGGATCTACCCGgtaaggaggaactctcccatcttctctcgcattcgtttctatgatttcctctcactctctcgacgttcttgggcttgaatttgctgcattgcattcatggcattccaaggaacttggaatcgatcacttgggtcgagttgcctggacgaaattcctctaaaaatctctcctttgttcttttttctttcccggcag